Variant report

Variant	rs3822252
Chromosome Location	chr4:16012557-16012558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10002535	1.00[EUR][1000 genomes]
rs11933619	1.00[EUR][1000 genomes]
rs16892671	1.00[AMR][1000 genomes]
rs16892674	1.00[AMR][1000 genomes]
rs16892779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2240686	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2302168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3796850	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73122460	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15964600-16031000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:15988400-16033800	Weak transcription	Pancreas	Pancrea
3	chr4:15989000-16014400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:15989000-16024200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:15990000-16015200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:15991000-16029000	Weak transcription	Stomach Mucosa	stomach
7	chr4:15992800-16024800	Weak transcription	Fetal Intestine Small	intestine
8	chr4:16003400-16019800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:16003400-16020200	Weak transcription	Left Ventricle	heart
10	chr4:16003400-16024600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:16003400-16027000	Weak transcription	Right Ventricle	heart
12	chr4:16004000-16021000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:16004200-16027600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:16004400-16021000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:16004600-16027800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:16005000-16013600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:16005400-16027200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:16006600-16018000	Strong transcription	Fetal Muscle Leg	muscle
19	chr4:16006600-16027200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:16007000-16022200	Strong transcription	Primary hematopoietic stem cells	blood
21	chr4:16007000-16027000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:16007000-16030800	Weak transcription	Fetal Kidney	kidney
23	chr4:16008000-16033000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:16008200-16019800	Weak transcription	Gastric	stomach
25	chr4:16008400-16012600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:16008400-16012800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:16008400-16015600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr4:16008400-16019800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:16008400-16021400	Weak transcription	Aorta	Aorta
30	chr4:16008400-16025000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:16008600-16012800	Weak transcription	Colonic Mucosa	Colon
32	chr4:16009200-16033200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr4:16010400-16012800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:16010600-16013400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:16010800-16038600	Weak transcription	Placenta	Placenta
36	chr4:16011000-16013200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:16011000-16023400	Weak transcription	Fetal Brain Female	brain
38	chr4:16011200-16016200	Strong transcription	Fetal Stomach	stomach
39	chr4:16011800-16013600	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr4:16011800-16013600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr4:16012000-16021000	Weak transcription	Right Atrium	heart
42	chr4:16012200-16013000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr4:16012200-16013400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:16012200-16013600	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr4:16012200-16026600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:16012400-16013200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr4:16012400-16016400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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