Variant report

Variant rs3823368
Chromosome Location chr6:29943906-29943907
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29934400-29944200 Weak transcription Aorta Aorta
2 chr6:29935600-29944800 Weak transcription Dnd41 blood
3 chr6:29941600-29944400 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
4 chr6:29942600-29944200 Flanking Bivalent TSS/Enh HUES6 Cell Line embryonic stem cell
5 chr6:29942600-29944400 Bivalent Enhancer Primary hematopoietic stem cells short term culture blood
6 chr6:29942600-29944400 Flanking Active TSS Adipose Nuclei Adipose
7 chr6:29942600-29944400 Flanking Bivalent TSS/Enh Duodenum Mucosa Duodenum
8 chr6:29942600-29945200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
9 chr6:29942600-29945400 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
10 chr6:29942600-29945400 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr6:29942800-29944000 Bivalent/Poised TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr6:29942800-29944200 Bivalent Enhancer Primary monocytes fromperipheralblood blood
13 chr6:29942800-29944200 Bivalent Enhancer Primary B cells from peripheral blood blood
14 chr6:29942800-29944400 Bivalent Enhancer Fetal Thymus thymus
15 chr6:29942800-29944400 Flanking Active TSS Skeletal Muscle Male skeletal muscle
16 chr6:29942800-29944400 Flanking Active TSS Skeletal Muscle Female skeletal muscle
17 chr6:29942800-29945400 Active TSS Pancreatic Islets Pancreatic Islet
18 chr6:29943000-29944000 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
19 chr6:29943000-29944000 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
20 chr6:29943000-29944200 Bivalent Enhancer Primary B cells from cord blood blood
21 chr6:29943000-29944400 Bivalent Enhancer Primary T helper naive cells from peripheral blood blood
22 chr6:29943000-29944400 Bivalent Enhancer Primary T helper memory cells from peripheral blood 1 blood
23 chr6:29943000-29944400 Flanking Active TSS Brain Anterior Caudate brain
24 chr6:29943000-29944400 Flanking Active TSS Rectal Mucosa Donor 29 rectum
25 chr6:29943000-29944400 Flanking Active TSS Stomach Smooth Muscle stomach
26 chr6:29943000-29944400 Flanking Active TSS HepG2 liver
27 chr6:29943200-29944000 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr6:29943200-29944000 Bivalent Enhancer GM12878-XiMat blood
29 chr6:29943200-29944000 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
30 chr6:29943200-29944200 Bivalent Enhancer Primary T helper 17 cells PMA-I stimulated --
31 chr6:29943200-29944200 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
32 chr6:29943200-29944400 Bivalent Enhancer Placenta Amnion Placenta Amnion
33 chr6:29943200-29945400 Flanking Bivalent TSS/Enh Primary T cells from cord blood blood
34 chr6:29943200-29945400 Active TSS Psoas Muscle Psoas
35 chr6:29943400-29944000 Enhancers Breast Myoepithelial Primary Cells Breast
36 chr6:29943400-29944000 Flanking Active TSS Sigmoid Colon Sigmoid Colon
37 chr6:29943400-29944000 Enhancers HMEC breast
38 chr6:29943400-29944200 Bivalent/Poised TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr6:29943400-29944200 Bivalent Enhancer Primary neutrophils fromperipheralblood blood
40 chr6:29943400-29944200 Bivalent Enhancer Primary T regulatory cells fromperipheralblood blood
41 chr6:29943400-29944200 Bivalent Enhancer Fetal Stomach stomach
42 chr6:29943400-29944400 Flanking Active TSS Rectal Mucosa Donor 31 rectum
43 chr6:29943600-29944000 Flanking Bivalent TSS/Enh iPS-15b Cell Line embryonic stem cell
44 chr6:29943600-29944000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
45 chr6:29943600-29944000 Bivalent Enhancer Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr6:29943600-29944000 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
47 chr6:29943600-29944000 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
48 chr6:29943600-29944000 Flanking Active TSS Colon Smooth Muscle Colon
49 chr6:29943600-29944000 Flanking Bivalent TSS/Enh Duodenum Smooth Muscle Duodenum
50 chr6:29943600-29944000 Enhancers Gastric stomach

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