Variant report

Variant	rs3824006
Chromosome Location	chr7:127241980-127241981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11977012	0.83[ASN][1000 genomes]
rs11977915	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.80[TSI][hapmap];0.83[ASN][1000 genomes]
rs11980318	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.83[ASN][1000 genomes]
rs13236900	0.87[CHD][hapmap]
rs17716738	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs2141259	0.82[CHD][hapmap]
rs2402866	0.88[CHD][hapmap]
rs327518	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3808105	0.83[ASN][1000 genomes]
rs4728077	0.83[ASN][1000 genomes]
rs73234861	0.83[ASN][1000 genomes]
rs73234862	0.83[ASN][1000 genomes]
rs741599	0.87[CHD][hapmap]
rs972088	0.81[CHD][hapmap]
rs972090	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127232000-127243200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:127232000-127245600	Weak transcription	Aorta	Aorta
3	chr7:127232200-127248200	Weak transcription	Spleen	Spleen
4	chr7:127233200-127244000	Weak transcription	Left Ventricle	heart
5	chr7:127233400-127243000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:127233800-127243000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:127241400-127248000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:127241800-127243400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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