Variant report

Variant	rs3824169
Chromosome Location	chr8:2081363-2081364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10099055	0.82[AMR][1000 genomes]
rs10103035	0.82[AMR][1000 genomes]
rs10503170	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13272507	0.82[AMR][1000 genomes]
rs17752179	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34039811	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35402008	0.82[AMR][1000 genomes]
rs35862926	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3779819	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3824167	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4262342	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4363227	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4535761	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4568639	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5023999	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55806773	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55955938	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62480003	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73169450	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2075400-2084000	Weak transcription	Spleen	Spleen
2	chr8:2075600-2092600	Weak transcription	Esophagus	oesophagus
3	chr8:2075800-2086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:2075800-2091400	Weak transcription	Gastric	stomach
5	chr8:2076000-2082400	Weak transcription	Aorta	Aorta
6	chr8:2076000-2085200	Weak transcription	Brain Anterior Caudate	brain
7	chr8:2076000-2085200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:2076000-2087000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:2076000-2092800	Weak transcription	Brain Angular Gyrus	brain
10	chr8:2076000-2093400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:2076000-2094400	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
13	chr8:2076200-2083600	Enhancers	Fetal Thymus	thymus
14	chr8:2076200-2085200	Weak transcription	Liver	Liver
15	chr8:2076200-2092400	Weak transcription	HSMMtube	muscle
16	chr8:2076400-2086600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:2076400-2097800	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:2076600-2085000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr8:2076600-2092800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:2076600-2096800	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:2078200-2083600	Weak transcription	Right Ventricle	heart
22	chr8:2078200-2085000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:2078200-2089600	Weak transcription	Psoas Muscle	Psoas
24	chr8:2079400-2082000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr8:2079400-2084000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr8:2079400-2084600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr8:2079400-2084600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr8:2079400-2094600	Weak transcription	Fetal Heart	heart
29	chr8:2079400-2095800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr8:2079600-2082000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:2079600-2084200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:2079600-2084200	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr8:2079600-2084400	Enhancers	Primary T cells from cord blood	blood
34	chr8:2079600-2084400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr8:2079600-2085000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:2079600-2093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:2079800-2093400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr8:2080400-2081400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr8:2080400-2087800	Strong transcription	Fetal Muscle Leg	muscle
40	chr8:2080800-2081400	Enhancers	Placenta Amnion	Placenta Amnion
41	chr8:2080800-2081600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:2080800-2096800	Strong transcription	Left Ventricle	heart
43	chr8:2081000-2087400	Weak transcription	Thymus	Thymus
44	chr8:2081200-2081400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr8:2081200-2081400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr8:2081200-2085200	Weak transcription	Pancreas	Pancrea
47	chr8:2081200-2089200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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