Variant report

Variant	rs3824259
Chromosome Location	chr8:39769593-39769594
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086641	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10093420	0.84[AFR][1000 genomes]
rs10105530	0.84[ASW][hapmap]
rs10283355	0.85[AMR][1000 genomes]
rs10958571	0.84[AMR][1000 genomes]
rs13273328	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1808344	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2010450	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2111742	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2340950	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28375138	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28462997	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2879895	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34208092	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34907746	0.85[AFR][1000 genomes]
rs3808606	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4472503	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474181	0.81[AFR][1000 genomes]
rs6474182	0.81[AFR][1000 genomes]
rs6474185	0.83[AMR][1000 genomes]
rs6474189	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6474190	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474191	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6474192	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980572	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984521	0.84[ASW][hapmap]
rs6989075	0.82[AMR][1000 genomes]
rs6998587	0.84[AFR][1000 genomes]
rs7004950	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7012629	0.84[AFR][1000 genomes]
rs7017272	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017446	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816397	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7825536	0.84[AFR][1000 genomes]
rs7838952	0.92[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7838957	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7839240	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs888447	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs888448	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9298585	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9657182	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9657183	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39760200-39770400	Weak transcription	Right Atrium	heart
2	chr8:39762600-39771200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:39763200-39781600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:39763200-39783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:39763400-39781000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:39763800-39780000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:39763800-39781800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:39765800-39773400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:39767800-39770400	Weak transcription	Hela-S3	cervix
10	chr8:39767800-39771200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:39768000-39770200	Weak transcription	Fetal Lung	lung
12	chr8:39768400-39771200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:39769000-39770600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:39769400-39770000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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