Variant report

Variant	rs382436
Chromosome Location	chr1:158165661-158165662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10908630	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs387525	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs388861	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs398012	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs400214	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406739	0.81[ASN][1000 genomes]
rs416989	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs432611	1.00[JPT][hapmap]
rs439384	1.00[JPT][hapmap]
rs440153	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs450125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638814	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv13585	chr1:158159222-158214160	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1814455	chr1:158160528-158200312	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv508626	chr1:158161932-158242158	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv946437	chr1:158164685-158166531	Strong transcription Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158161600-158165800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:158161600-158167000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:158161600-158167200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:158163800-158166600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:158163800-158166800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:158164000-158166600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:158164000-158172800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:158164400-158167200	Strong transcription	Dnd41	blood
9	chr1:158165400-158166000	Enhancers	Pancreas	Pancrea
10	chr1:158165400-158166000	Strong transcription	Thymus	Thymus
11	chr1:158165600-158167200	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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