Variant report

Variant	rs3825023
Chromosome Location	chr11:18270669-18270670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1114826	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs1869784	0.81[AFR][1000 genomes]
rs3758946	0.82[CEU][hapmap]
rs57510098	0.94[AFR][1000 genomes]
rs7108313	0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs7108460	0.95[AFR][1000 genomes]
rs73428850	0.83[AFR][1000 genomes]
rs7933280	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs7944002	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18260000-18278200	Weak transcription	Aorta	Aorta
2	chr11:18268600-18276000	Weak transcription	Esophagus	oesophagus
3	chr11:18270200-18270800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:18270200-18270800	Enhancers	HMEC	breast
5	chr11:18270200-18271000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:18270200-18271200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:18270200-18273200	Enhancers	GM12878-XiMat	blood
8	chr11:18270400-18270800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:18270400-18270800	Enhancers	Placenta	Placenta
10	chr11:18270600-18271000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links