Variant report

Variant	rs38253
Chromosome Location	chr7:15948315-15948316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11980731	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38227	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs38228	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs38229	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs38230	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs38232	0.80[EUR][1000 genomes]
rs38235	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs38255	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs38256	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs38257	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1017958	chr7:15910153-15956470	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15946400-15955400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:15946800-15948400	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:15948200-15948600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr7:15948200-15948800	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr7:15948200-15949400	Enhancers	Fetal Muscle Leg	muscle
6	chr7:15948200-15949600	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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