Variant report

Variant	rs3825590
Chromosome Location	chr14:25280256-25280257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25279193..25282609-chr14:25287302..25290092,3	MCF-7	breast:
2	chr14:25278755..25280361-chr14:25308783..25311776,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168952	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1381323	0.94[ASN][1000 genomes]
rs3825591	0.99[ASN][1000 genomes]
rs749594	0.97[ASN][1000 genomes]
rs8007336	0.96[ASN][1000 genomes]
rs8018496	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035284	chr14:25267840-25285191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv542003	chr14:25267840-25285191	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv525203	chr14:25270335-25282967	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25272400-25283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:25274000-25283000	Weak transcription	Gastric	stomach
3	chr14:25275200-25285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:25275400-25285000	Weak transcription	Lung	lung
5	chr14:25276000-25280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:25276000-25281400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:25276200-25282000	Weak transcription	Fetal Brain Female	brain
8	chr14:25276200-25285400	Weak transcription	Adipose Nuclei	Adipose
9	chr14:25276200-25286600	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:25276600-25284800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:25276800-25284800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:25277200-25282400	Enhancers	Fetal Lung	lung
13	chr14:25277800-25280800	Enhancers	HepG2	liver
14	chr14:25277800-25286600	Weak transcription	Placenta	Placenta
15	chr14:25278000-25286400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:25278400-25283200	Weak transcription	Right Ventricle	heart
17	chr14:25278600-25283200	Enhancers	Liver	Liver
18	chr14:25278600-25283800	Enhancers	Fetal Intestine Small	intestine
19	chr14:25278600-25287600	Enhancers	Fetal Intestine Large	intestine
20	chr14:25278800-25284800	Weak transcription	HSMM	muscle
21	chr14:25279200-25282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:25279400-25280400	Enhancers	Fetal Brain Male	brain
23	chr14:25279400-25280600	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:25279400-25284800	Enhancers	Fetal Heart	heart
25	chr14:25279600-25280800	Enhancers	Fetal Stomach	stomach
26	chr14:25279600-25283000	Weak transcription	Small Intestine	intestine
27	chr14:25279800-25280600	Enhancers	Brain Germinal Matrix	brain
28	chr14:25279800-25282000	Weak transcription	Stomach Mucosa	stomach
29	chr14:25279800-25282800	Weak transcription	Pancreas	Pancrea
30	chr14:25279800-25283000	Weak transcription	Left Ventricle	heart
31	chr14:25279800-25284800	Weak transcription	Fetal Kidney	kidney
32	chr14:25279800-25284800	Weak transcription	Fetal Muscle Leg	muscle
33	chr14:25279800-25284800	Weak transcription	Right Atrium	heart
34	chr14:25279800-25285600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr14:25279800-25286400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:25279800-25286800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:25279800-25287400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:25280000-25280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:25280000-25282000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr14:25280000-25282400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr14:25280000-25285200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:25280000-25285400	Weak transcription	Brain Angular Gyrus	brain
43	chr14:25280000-25285400	Weak transcription	HSMMtube	muscle
44	chr14:25280000-25285600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:25280000-25285600	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:25280000-25286200	Weak transcription	Brain Substantia Nigra	brain
47	chr14:25280200-25280600	Weak transcription	Brain Anterior Caudate	brain
48	chr14:25280200-25284600	Weak transcription	Stomach Smooth Muscle	stomach

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