Variant report

Variant	rs3825736
Chromosome Location	chr14:70079465-70079466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:70078185..70080215-chr14:70232416..70234645,2	K562	blood:
2	chr14:70079455..70080135-chr14:70193509..70194042,2	MCF-7	breast:
3	chr14:70078362..70080995-chr14:70181831..70184954,3	MCF-7	breast:
4	chr14:70077094..70079754-chr14:70233044..70235632,2	K562	blood:
5	chr14:70078988..70081475-chr14:70103806..70105577,2	MCF-7	breast:
6	chr14:70079232..70080112-chr14:70175519..70176175,3	MCF-7	breast:
7	chr14:70078972..70081003-chr14:70168060..70169859,2	MCF-7	breast:
8	chr14:70077771..70080127-chr14:70232780..70235719,3	MCF-7	breast:
9	chr14:70069839..70070933-chr14:70079326..70080176,3	MCF-7	breast:
10	chr14:70078354..70079913-chr14:70192981..70195416,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11620826	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11622092	0.80[EUR][1000 genomes]
rs11623812	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627867	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629212	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12587433	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1275747	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs1275748	0.85[CEU][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes]
rs1275749	1.00[CEU][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes]
rs17107177	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1763223	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs1957365	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275124	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs3784143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784144	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784149	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes]
rs4899310	0.90[ASN][1000 genomes]
rs4902742	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57016627	0.82[EUR][1000 genomes]
rs61980727	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980737	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61982060	1.00[EUR][1000 genomes]
rs61982061	1.00[EUR][1000 genomes]
rs61982064	0.80[EUR][1000 genomes]
rs61982065	0.80[EUR][1000 genomes]
rs8010776	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8020026	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3388575	chr14:70077224-70080072	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70077400-70079600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:70077400-70079600	Active TSS	HSMMtube	muscle
3	chr14:70077400-70079800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr14:70077400-70080200	Active TSS	Psoas Muscle	Psoas
5	chr14:70077600-70079600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr14:70077600-70079600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:70077600-70079600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr14:70077600-70079600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:70077600-70079800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:70077600-70079800	Active TSS	Ovary	ovary
11	chr14:70077600-70080000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:70077600-70080000	Active TSS	NHLF	lung
13	chr14:70077600-70080200	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr14:70077600-70080200	Active TSS	Aorta	Aorta
15	chr14:70077600-70080200	Active TSS	Left Ventricle	heart
16	chr14:70077600-70081000	Active TSS	Esophagus	oesophagus
17	chr14:70077800-70079600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:70077800-70079600	Active TSS	Fetal Kidney	kidney
19	chr14:70077800-70079600	Active TSS	Gastric	stomach
20	chr14:70077800-70079800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:70077800-70079800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:70077800-70079800	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr14:70077800-70079800	Active TSS	Small Intestine	intestine
24	chr14:70077800-70080000	Active TSS	Right Ventricle	heart
25	chr14:70077800-70080200	Active TSS	Right Atrium	heart
26	chr14:70077800-70080400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:70077800-70080400	Active TSS	Lung	lung
28	chr14:70078000-70079600	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr14:70078000-70079600	Active TSS	Brain Substantia Nigra	brain
30	chr14:70078000-70079600	Active TSS	NHDF-Ad	bronchial
31	chr14:70078000-70079800	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr14:70078000-70079800	Active TSS	Rectal Smooth Muscle	rectum
33	chr14:70078000-70080000	Active TSS	Thymus	Thymus
34	chr14:70078000-70080200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:70078000-70080200	Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr14:70078000-70080200	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr14:70078000-70080400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:70078000-70081000	Active TSS	GM12878-XiMat	blood
39	chr14:70078200-70079600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:70078200-70080000	Active TSS	HMEC	breast
41	chr14:70078400-70080400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:70078800-70080800	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr14:70078800-70080800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:70079000-70079600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr14:70079000-70079800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr14:70079000-70079800	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr14:70079000-70079800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr14:70079000-70079800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:70079000-70079800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr14:70079000-70079800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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