Variant report

Variant	rs3826106
Chromosome Location	chr16:79629569-79629570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3743597	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58622029	0.85[ASN][1000 genomes]
rs7189642	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv457554	chr16:79608408-79645989	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv573289	chr16:79608408-79645989	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv827768	chr16:79615278-79640094	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv827769	chr16:79628439-79631347	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79622200-79631400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:79624000-79629800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:79624800-79629600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:79624800-79630000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:79624800-79630800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr16:79624800-79631400	Weak transcription	Esophagus	oesophagus
7	chr16:79624800-79632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:79625800-79636800	Active TSS	Psoas Muscle	Psoas
9	chr16:79626400-79631800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr16:79626600-79632400	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr16:79626800-79636400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr16:79627200-79633000	Transcr. at gene 5' and 3'	Fetal Lung	lung
13	chr16:79627200-79635600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
14	chr16:79627400-79629600	Active TSS	Brain Hippocampus Middle	brain
15	chr16:79627400-79632600	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr16:79627800-79630000	Weak transcription	Small Intestine	intestine
17	chr16:79628000-79629800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr16:79628000-79632600	Active TSS	Placenta	Placenta
19	chr16:79628000-79636200	Active TSS	NHDF-Ad	bronchial
20	chr16:79628400-79629600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr16:79628400-79629800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr16:79628400-79636200	Active TSS	Brain Cingulate Gyrus	brain
23	chr16:79628600-79630000	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr16:79628600-79630200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:79628600-79631000	Active TSS	Brain Germinal Matrix	brain
26	chr16:79628600-79631200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr16:79628600-79632400	Active TSS	Fetal Intestine Small	intestine
28	chr16:79628600-79633400	Active TSS	Right Atrium	heart
29	chr16:79628600-79636400	Active TSS	Brain Anterior Caudate	brain
30	chr16:79628800-79629600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr16:79628800-79629600	Active TSS	Duodenum Mucosa	Duodenum
32	chr16:79628800-79629600	Active TSS	Fetal Kidney	kidney
33	chr16:79628800-79629800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr16:79628800-79630600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr16:79628800-79632400	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr16:79628800-79636200	Active TSS	Colon Smooth Muscle	Colon
37	chr16:79628800-79636200	Active TSS	Stomach Smooth Muscle	stomach
38	chr16:79628800-79637000	Active TSS	Brain Substantia Nigra	brain
39	chr16:79629000-79629600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr16:79629000-79629800	Active TSS	Primary T cells fromperipheralblood	blood
41	chr16:79629000-79629800	Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr16:79629000-79629800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr16:79629000-79629800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr16:79629000-79630000	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr16:79629000-79630000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr16:79629000-79630000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr16:79629000-79630000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr16:79629000-79630400	Flanking Active TSS	NHEK	skin
49	chr16:79629000-79630600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr16:79629000-79630800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links