Variant report

Variant	rs3826897
Chromosome Location	chr19:38773860-38773861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38759485..38762494-chr19:38770790..38773902,4	K562	blood:
2	chr19:38759881..38761740-chr19:38772402..38774668,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3786880	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv833822	chr19:38760748-38945105	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38756800-38774800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr19:38756800-38775000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr19:38756800-38778600	Weak transcription	Thymus	Thymus
4	chr19:38756800-38779600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:38758000-38774200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr19:38758400-38774400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr19:38759600-38783200	Weak transcription	Fetal Brain Male	brain
8	chr19:38765800-38794800	Weak transcription	Small Intestine	intestine
9	chr19:38769200-38774400	Genic enhancers	HMEC	breast
10	chr19:38769200-38774800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr19:38769200-38778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr19:38769200-38791200	Weak transcription	Fetal Kidney	kidney
13	chr19:38769400-38776000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr19:38769400-38779200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr19:38769400-38795200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr19:38769600-38775200	Weak transcription	NHDF-Ad	bronchial
17	chr19:38769600-38778400	Weak transcription	Brain Substantia Nigra	brain
18	chr19:38769800-38775600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:38769800-38775800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:38769800-38778000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr19:38769800-38778200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:38769800-38778200	Weak transcription	Brain Hippocampus Middle	brain
23	chr19:38769800-38779000	Weak transcription	Brain Anterior Caudate	brain
24	chr19:38769800-38779000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr19:38769800-38779000	Weak transcription	HSMM	muscle
26	chr19:38769800-38779200	Weak transcription	Brain Angular Gyrus	brain
27	chr19:38769800-38780400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr19:38770000-38774000	Weak transcription	HUVEC	blood vessel
29	chr19:38770000-38780600	Weak transcription	Brain Germinal Matrix	brain
30	chr19:38770400-38774200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr19:38770400-38774400	Genic enhancers	NHEK	skin
32	chr19:38770600-38777000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr19:38770800-38775000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr19:38770800-38785800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr19:38771200-38774000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr19:38771200-38774000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr19:38771200-38776000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr19:38771200-38779000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr19:38771400-38774000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr19:38771400-38774800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr19:38771400-38774800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr19:38771400-38775000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr19:38771400-38775400	Weak transcription	Adipose Nuclei	Adipose
44	chr19:38771400-38776000	Weak transcription	NHLF	lung
45	chr19:38771400-38778200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr19:38771400-38778200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr19:38771400-38778600	Weak transcription	Fetal Lung	lung
48	chr19:38771400-38805800	Weak transcription	Right Atrium	heart
49	chr19:38771800-38774800	Weak transcription	Fetal Stomach	stomach
50	chr19:38771800-38775000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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