Variant report

Variant	rs3827714
Chromosome Location	chr1:94583589-94583590
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94532482..94534156-chr1:94582374..94584202,2	MCF-7	breast:
2	chr1:94564934..94567258-chr1:94582385..94584556,2	MCF-7	breast:
3	chr1:94561960..94563528-chr1:94582281..94584718,2	MCF-7	breast:
4	chr1:94532251..94537168-chr1:94582958..94586481,4	MCF-7	breast:
5	chr1:94567418..94570803-chr1:94581520..94584135,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10493869	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10493870	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10874835	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11165076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165079	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11165080	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11165082	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11588391	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12025221	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12035820	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1931564	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1931566	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931570	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3789439	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789440	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789442	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789443	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789444	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789445	0.85[EUR][1000 genomes]
rs4147798	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147801	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147807	0.84[ASN][1000 genomes]
rs4147808	0.84[ASN][1000 genomes]
rs61784007	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61784009	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807674	chr1:94549175-94588191	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv870932	chr1:94579053-94607607	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv871679	chr1:94579426-94598568	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv871502	chr1:94579426-94607607	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv871306	chr1:94579426-94609478	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv523430	chr1:94582249-94591481	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94564600-94591800	Weak transcription	Right Atrium	heart
2	chr1:94567400-94585400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:94580200-94587600	Enhancers	Placenta	Placenta
4	chr1:94580400-94587600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:94581000-94585200	Enhancers	Ovary	ovary
6	chr1:94581200-94584200	Enhancers	NHDF-Ad	bronchial
7	chr1:94581200-94584400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:94581400-94583600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:94581400-94583800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:94581400-94584200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:94581400-94585200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:94581400-94587600	Enhancers	Fetal Muscle Leg	muscle
13	chr1:94581400-94588000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:94581600-94583600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:94581600-94583600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr1:94581600-94583800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:94581600-94585000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:94581600-94586200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:94581600-94588600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:94582000-94583800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr1:94582000-94583800	Enhancers	Fetal Stomach	stomach
22	chr1:94582000-94583800	Weak transcription	A549	lung
23	chr1:94582000-94585600	Enhancers	Fetal Muscle Trunk	muscle
24	chr1:94582200-94583600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr1:94582200-94587400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr1:94582800-94583600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:94582800-94583600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:94582800-94583600	Enhancers	Right Ventricle	heart
29	chr1:94582800-94583800	Weak transcription	Osteobl	bone
30	chr1:94582800-94584400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr1:94582800-94584400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr1:94582800-94584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:94583000-94583600	Enhancers	Pancreas	Pancrea
34	chr1:94583000-94585000	Enhancers	Left Ventricle	heart
35	chr1:94583000-94585000	Enhancers	Spleen	Spleen
36	chr1:94583000-94585600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:94583000-94591400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:94583200-94584400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr1:94583200-94584800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:94583200-94585600	Weak transcription	Brain Substantia Nigra	brain
41	chr1:94583200-94585600	Enhancers	HepG2	liver
42	chr1:94583200-94586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:94583400-94583600	Flanking Active TSS	Fetal Kidney	kidney
44	chr1:94583400-94584200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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