Variant report

Variant	rs3828078
Chromosome Location	chr1:154441484-154441485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154440133..154443020-chr1:154529581..154531966,2	MCF-7	breast:
2	chr1:154435097..154437712-chr1:154439386..154441987,2	MCF-7	breast:
3	chr1:154299377..154301851-chr1:154439131..154442124,2	MCF-7	breast:
4	chr1:154429933..154432687-chr1:154440659..154442962,2	K562	blood:
5	chr1:154431187..154433172-chr1:154441462..154443845,2	K562	blood:

Variant related genes	Relation type
ENSG00000143515	Chromatin interaction
ENSG00000160714	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7537595	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154426800-154442200	Weak transcription	HepG2	liver
2	chr1:154426800-154450000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:154427800-154464800	Weak transcription	Ovary	ovary
4	chr1:154429800-154446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:154432000-154442000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:154436400-154441800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:154436400-154446400	Weak transcription	NHEK	skin
8	chr1:154436400-154446600	Weak transcription	HMEC	breast
9	chr1:154436600-154441600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:154436600-154441600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:154436600-154446800	Weak transcription	NHDF-Ad	bronchial
12	chr1:154436600-154450600	Weak transcription	HUVEC	blood vessel
13	chr1:154437200-154441600	Strong transcription	Lung	lung
14	chr1:154437400-154442000	Weak transcription	Colonic Mucosa	Colon
15	chr1:154437800-154442800	Enhancers	Brain Hippocampus Middle	brain
16	chr1:154438000-154442600	Weak transcription	Fetal Stomach	stomach
17	chr1:154438200-154442200	Weak transcription	Stomach Mucosa	stomach
18	chr1:154438400-154445800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:154438400-154446000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:154438400-154457800	Weak transcription	Pancreas	Pancrea
21	chr1:154438400-154458400	Weak transcription	Gastric	stomach
22	chr1:154438400-154463400	Weak transcription	Esophagus	oesophagus
23	chr1:154438600-154442000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:154438600-154446800	Weak transcription	NHLF	lung
25	chr1:154438800-154441600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr1:154438800-154441800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr1:154438800-154442200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr1:154438800-154442600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:154438800-154444200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr1:154438800-154446400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:154438800-154447200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:154438800-154450800	Weak transcription	Primary T cells from cord blood	blood
33	chr1:154438800-154454000	Weak transcription	Psoas Muscle	Psoas
34	chr1:154439200-154441600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:154439200-154442000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr1:154439400-154442600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:154439400-154457600	Weak transcription	Placenta	Placenta
38	chr1:154439600-154441600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:154439600-154442400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr1:154439600-154443000	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr1:154440000-154442800	Strong transcription	Left Ventricle	heart
42	chr1:154440000-154443000	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr1:154440000-154452800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr1:154440000-154458200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:154440200-154441600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr1:154440400-154442400	Enhancers	Liver	Liver
47	chr1:154440400-154446400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr1:154440600-154441600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:154440600-154441600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:154440600-154441600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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