Variant report

Variant	rs3828275
Chromosome Location	chr2:171682740-171682741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12185692	0.91[ASN][1000 genomes]
rs13000989	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420385	0.92[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36019625	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3749035	0.94[ASN][1000 genomes]
rs3791866	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3791867	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171679600-171688800	Weak transcription	K562	blood
2	chr2:171680200-171688800	Weak transcription	NHDF-Ad	bronchial
3	chr2:171680400-171686800	Weak transcription	Aorta	Aorta
4	chr2:171681200-171693800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:171682200-171691600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:171682400-171683200	Weak transcription	Brain Germinal Matrix	brain
7	chr2:171682600-171683400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:171682600-171683600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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