The 2.0 version of rSNPBase

Variant report

Variant rs3829008
Chromosome Location chr8:59059930-59059931
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:59058000-59060200 Enhancers Fetal Brain Male brain
2 chr8:59058600-59060000 Strong transcription Liver Liver
3 chr8:59058600-59060200 ZNF genes & repeats Fetal Stomach stomach
4 chr8:59058600-59060400 Weak transcription Aorta Aorta
5 chr8:59058600-59060800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr8:59058800-59060000 Enhancers Rectal Mucosa Donor 29 rectum
7 chr8:59058800-59060200 Genic enhancers Left Ventricle heart
8 chr8:59058800-59060200 Enhancers Lung lung
9 chr8:59058800-59060200 Strong transcription Skeletal Muscle Male skeletal muscle
10 chr8:59058800-59060200 Strong transcription Skeletal Muscle Female skeletal muscle
11 chr8:59058800-59060600 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr8:59058800-59060600 Weak transcription Colon Smooth Muscle Colon
13 chr8:59058800-59060800 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr8:59058800-59067400 Weak transcription Muscle Satellite Cultured Cells --
15 chr8:59058800-59068800 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr8:59059000-59060000 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
17 chr8:59059000-59060200 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr8:59059000-59060200 Weak transcription HUES6 Cell Line embryonic stem cell
19 chr8:59059000-59060200 Enhancers Brain Substantia Nigra brain
20 chr8:59059000-59060600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr8:59059000-59060800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr8:59059000-59061000 ZNF genes & repeats Brain Germinal Matrix brain
23 chr8:59059000-59061000 Weak transcription Right Atrium heart
24 chr8:59059000-59061000 ZNF genes & repeats GM12878-XiMat blood
25 chr8:59059000-59061400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr8:59059000-59061400 Genic enhancers Cortex derived primary cultured neurospheres brain
27 chr8:59059000-59061800 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr8:59059000-59062000 Enhancers Primary monocytes fromperipheralblood blood
29 chr8:59059000-59067400 Weak transcription Adipose Nuclei Adipose
30 chr8:59059200-59060000 Flanking Active TSS Brain Hippocampus Middle brain
31 chr8:59059200-59060600 Enhancers Brain Anterior Caudate brain
32 chr8:59059200-59061400 Weak transcription HUES48 Cell Line embryonic stem cell
33 chr8:59059200-59063400 Weak transcription Ovary ovary
34 chr8:59059200-59067600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr8:59059400-59060000 Enhancers Brain Inferior Temporal Lobe brain
36 chr8:59059400-59060200 Strong transcription HSMMtube muscle
37 chr8:59059400-59060200 Strong transcription NHLF lung
38 chr8:59059400-59060400 Enhancers Brain Cingulate Gyrus brain
39 chr8:59059400-59061200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr8:59059400-59061400 Genic enhancers Ganglion Eminence derived primary cultured neurospheres brain
41 chr8:59059400-59063800 Weak transcription Gastric stomach
42 chr8:59059600-59060000 Enhancers Brain Angular Gyrus brain
43 chr8:59059600-59060200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr8:59059600-59060200 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr8:59059600-59060200 Genic enhancers Fetal Heart heart
46 chr8:59059600-59060200 Strong transcription Stomach Smooth Muscle stomach
47 chr8:59059600-59060600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr8:59059600-59060600 Strong transcription Fetal Muscle Leg muscle
49 chr8:59059600-59060800 Weak transcription Right Ventricle heart
50 chr8:59059600-59061000 Strong transcription HSMM muscle

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Last update: Aug 31, 2015