Variant report

Variant	rs3829389
Chromosome Location	chr13:61989588-61989589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17059755	1.00[EUR][1000 genomes]
rs17059756	1.00[EUR][1000 genomes]
rs17059759	1.00[EUR][1000 genomes]
rs17059767	1.00[EUR][1000 genomes]
rs17059776	1.00[EUR][1000 genomes]
rs17059780	1.00[EUR][1000 genomes]
rs17059804	1.00[EUR][1000 genomes]
rs17059844	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900245	chr13:61873379-62057698	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948661	chr13:61906251-62179649	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv510587	chr13:61979753-61994053	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv832628	chr13:61985540-62153692	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61987200-61990200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr13:61987200-61990200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr13:61987400-61989800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:61987600-61989600	Active TSS	Aorta	Aorta
5	chr13:61987600-61989800	Active TSS	Colon Smooth Muscle	Colon
6	chr13:61987600-61989800	Active TSS	Rectal Smooth Muscle	rectum
7	chr13:61987600-61990200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:61987600-61990200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr13:61987600-61990600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr13:61987600-61990600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr13:61987600-61990800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr13:61987800-61989600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:61987800-61989600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
14	chr13:61987800-61989800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:61987800-61989800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:61987800-61989800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
17	chr13:61987800-61989800	Active TSS	Right Atrium	heart
18	chr13:61987800-61990000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr13:61987800-61990000	Active TSS	Brain Angular Gyrus	brain
20	chr13:61987800-61990000	Active TSS	Fetal Kidney	kidney
21	chr13:61987800-61990200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr13:61987800-61990200	Active TSS	Fetal Heart	heart
23	chr13:61987800-61990200	Active TSS	Right Ventricle	heart
24	chr13:61988000-61989800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:61988000-61989800	Active TSS	Colonic Mucosa	Colon
26	chr13:61988000-61990000	Active TSS	Brain Anterior Caudate	brain
27	chr13:61988000-61990200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr13:61988000-61990200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr13:61988000-61990600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr13:61988200-61989800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr13:61988200-61989800	Active TSS	Brain Substantia Nigra	brain
32	chr13:61988200-61989800	Active TSS	Gastric	stomach
33	chr13:61988200-61989800	Active TSS	Left Ventricle	heart
34	chr13:61988200-61990000	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr13:61988400-61989600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:61988400-61989600	Active TSS	Stomach Mucosa	stomach
37	chr13:61988400-61989800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr13:61988400-61989800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr13:61988400-61990000	Flanking Active TSS	Liver	Liver
40	chr13:61988400-61990000	Active TSS	Brain Hippocampus Middle	brain
41	chr13:61988600-61989600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:61988600-61989600	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr13:61988600-61989600	Bivalent/Poised TSS	Fetal Brain Male	brain
44	chr13:61988600-61989600	Active TSS	Lung	lung
45	chr13:61988600-61990200	Active TSS	Fetal Intestine Small	intestine
46	chr13:61988800-61989600	Active TSS	Esophagus	oesophagus
47	chr13:61988800-61989600	Active TSS	Fetal Lung	lung
48	chr13:61988800-61989600	Flanking Active TSS	Pancreas	Pancrea
49	chr13:61988800-61989600	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr13:61988800-61989600	Bivalent/Poised TSS	A549	lung

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