Variant report

Variant	rs3831034
Chromosome Location	chr13:95358759-95358760
allele	-/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr13:95358681-95358768	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95357906..95359959-chr13:95361552..95364059,2	MCF-7	breast:
2	chr13:95325863..95327596-chr13:95357586..95359779,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOX21-1	chr13:95358391-95359564	XLOC_010695

Variant related genes	Relation type
LINC00391	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1824604	chr13:95357807-95365771	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv826750	chr13:95358502-95368070	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95355800-95359600	Weak transcription	Pancreas	Pancrea
2	chr13:95357200-95359600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
3	chr13:95357600-95360800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:95357800-95359600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
5	chr13:95358400-95358800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:95358400-95358800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:95358400-95358800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr13:95358400-95358800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr13:95358400-95358800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr13:95358400-95361600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr13:95358400-95361600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
12	chr13:95358600-95358800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr13:95358600-95358800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr13:95358600-95358800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr13:95358600-95358800	Bivalent Enhancer	Brain Germinal Matrix	brain
16	chr13:95358600-95358800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
17	chr13:95358600-95359000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
18	chr13:95358600-95359000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:95358600-95359000	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
20	chr13:95358600-95359600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:95358600-95359600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:95358600-95362400	Active TSS	H1 Cell Line	embryonic stem cell

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