Variant report

Variant	rs3835060
Chromosome Location	chr11:46316795-46316796
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46258381..46272821-chr11:46315090..46322037,29	K562	blood:
2	chr11:46297163..46299928-chr11:46315664..46318105,2	MCF-7	breast:
3	chr11:46255391..46271183-chr11:46315085..46324739,29	K562	blood:
4	chr11:46292495..46300520-chr11:46315192..46320567,9	MCF-7	breast:
5	chr11:46315321..46317782-chr11:46358888..46360388,2	K562	blood:
6	chr11:46293083..46308698-chr11:46310742..46320666,35	K562	blood:

Variant related genes	Relation type
ENSG00000255007	Chromatin interaction
ENSG00000149091	Chromatin interaction
ENSG00000254639	Chromatin interaction
ENSG00000157613	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11038856	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485672	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6485673	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485674	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7943699	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46307200-46317000	Weak transcription	Small Intestine	intestine
2	chr11:46309000-46316800	Weak transcription	GM12878-XiMat	blood
3	chr11:46310000-46316800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:46313400-46316800	Enhancers	HSMMtube	muscle
5	chr11:46314000-46316800	Enhancers	Placenta	Placenta
6	chr11:46314000-46317000	Weak transcription	Fetal Kidney	kidney
7	chr11:46314800-46316800	Enhancers	Fetal Thymus	thymus
8	chr11:46315000-46317600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:46315200-46316800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:46315200-46318000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:46315400-46316800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:46315400-46316800	Enhancers	Gastric	stomach
13	chr11:46315400-46316800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:46315400-46318000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr11:46315600-46316800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:46316000-46316800	Enhancers	A549	lung
17	chr11:46316000-46317800	Enhancers	Fetal Brain Male	brain
18	chr11:46316200-46316800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr11:46316200-46316800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
20	chr11:46316200-46317000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
21	chr11:46316200-46317000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:46316200-46317000	Enhancers	Lung	lung
23	chr11:46316200-46317400	Flanking Active TSS	NHLF	lung
24	chr11:46316200-46318000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr11:46316200-46318400	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr11:46316400-46316800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr11:46316400-46316800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:46316400-46316800	Enhancers	Stomach Mucosa	stomach
29	chr11:46316400-46316800	Enhancers	HMEC	breast
30	chr11:46316400-46317000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:46316400-46317000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr11:46316400-46317000	Flanking Active TSS	K562	blood
33	chr11:46316400-46317200	Flanking Bivalent TSS/Enh	HepG2	liver
34	chr11:46316400-46317400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:46316400-46317400	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr11:46316400-46317400	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr11:46316400-46317800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:46316400-46317800	Flanking Active TSS	Dnd41	blood
39	chr11:46316400-46318000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr11:46316400-46318200	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr11:46316400-46318600	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr11:46316400-46318600	Active TSS	H9 Cell Line	embryonic stem cell
43	chr11:46316400-46318600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:46316400-46318600	Flanking Active TSS	HSMM	muscle
45	chr11:46316600-46316800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:46316600-46316800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:46316600-46316800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:46316600-46316800	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr11:46316600-46316800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
50	chr11:46316600-46316800	Bivalent Enhancer	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links