Variant report

Variant	rs3841025
Chromosome Location	chr6:146058040-146058041
allele	-/CA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr6:146057683-146058175	K562	blood:	n/a	n/a
2	MAFF	chr6:146057010-146058120	K562	blood:	n/a	chr6:146057511-146057529
3	FOS	chr6:146058013-146058044	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr6:146055289-146058747	K562	blood:	n/a	n/a
5	POLR2A	chr6:146055683-146058281	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:146055006-146058050	K562	blood:	n/a	n/a
7	POLR2A	chr6:146055161-146058357	IMR90	lung:	n/a	n/a
8	RCOR1	chr6:146057751-146058148	K562	blood:	n/a	n/a
9	POLR2A	chr6:146057672-146058515	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr6:146055061-146058277	MCF10A-Er-Src	breast:	n/a	n/a
11	HEY1	chr6:146057910-146058114	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146054764..146058281-chr6:146133205..146137397,13	MCF-7	breast:
2	chr6:146054881..146058754-chr6:146284576..146286666,3	K562	blood:
3	chr6:146055814..146058166-chr6:146135376..146138309,3	MCF-7	breast:
4	chr6:146051601..146058492-chr6:146282422..146286666,8	K562	blood:
5	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
6	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM1-11	chr6:146056706-146058354	ENSG00000270638.1

No data

Variant related genes	Relation type
EPM2A	TF binding region
ENSG00000146414	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970354	chr6:146057495-146060252	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146054800-146058400	Active TSS	Stomach Smooth Muscle	stomach
2	chr6:146055000-146058400	Active TSS	Brain Germinal Matrix	brain
3	chr6:146055000-146058400	Active TSS	Right Atrium	heart
4	chr6:146055200-146058400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:146055400-146058400	Active TSS	Brain Anterior Caudate	brain
6	chr6:146055600-146058200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:146055600-146058200	Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr6:146055600-146058200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr6:146055600-146058200	Active TSS	Fetal Brain Female	brain
10	chr6:146055600-146058400	Active TSS	HSMMtube	muscle
11	chr6:146055600-146058800	Active TSS	Aorta	Aorta
12	chr6:146056800-146058200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr6:146056800-146058400	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr6:146056800-146058400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:146057200-146058400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:146057200-146063200	Weak transcription	Lung	lung
17	chr6:146057400-146058200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:146057400-146058200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:146057400-146058200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:146057400-146058200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:146057400-146058200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:146057400-146058200	Enhancers	HepG2	liver
23	chr6:146057400-146058400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:146057400-146058400	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:146057400-146058400	Enhancers	HSMM	muscle
26	chr6:146057400-146058600	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:146057400-146058600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:146057400-146058600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:146057600-146058200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:146057600-146058200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:146057600-146058200	Flanking Active TSS	Fetal Lung	lung
32	chr6:146057600-146058200	Flanking Active TSS	K562	blood
33	chr6:146057600-146058400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:146057600-146058400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:146057600-146058400	Enhancers	Dnd41	blood
36	chr6:146057600-146058400	Enhancers	HUVEC	blood vessel
37	chr6:146057600-146058400	Enhancers	NHEK	skin
38	chr6:146057600-146058400	Enhancers	Osteobl	bone
39	chr6:146057600-146058600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:146057600-146058600	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:146057600-146058600	Enhancers	Fetal Intestine Small	intestine
42	chr6:146057600-146058600	Enhancers	Fetal Kidney	kidney
43	chr6:146057600-146058800	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr6:146057600-146058800	Enhancers	Fetal Intestine Large	intestine
45	chr6:146057800-146058200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:146057800-146058200	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:146057800-146058200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr6:146057800-146058200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:146057800-146058200	Active TSS	NHLF	lung
50	chr6:146057800-146058400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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