Variant report

Variant	rs3842905
Chromosome Location	chr3:112356552-112356553
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112354988..112357166-chr3:112709171..112711334,2	MCF-7	breast:
2	chr3:112354638..112357493-chr3:112357624..112362114,5	K562	blood:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction
ENSG00000272844	Chromatin interaction
ENSG00000163607	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2279531	0.80[EUR][1000 genomes]
rs6772337	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6794305	0.80[EUR][1000 genomes]
rs9815819	0.92[YRI][hapmap]
rs9870933	0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112342600-112359600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:112343400-112358000	Weak transcription	Pancreas	Pancrea
3	chr3:112345200-112359400	Weak transcription	Esophagus	oesophagus
4	chr3:112348200-112358400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:112348600-112357200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:112348800-112358400	Weak transcription	Hela-S3	cervix
7	chr3:112351400-112358600	Transcr. at gene 5' and 3'	Osteobl	bone
8	chr3:112351800-112357800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:112352600-112358400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:112353000-112358600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:112353000-112358600	Weak transcription	Fetal Brain Male	brain
12	chr3:112353800-112357200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr3:112354000-112356600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:112354000-112357000	Active TSS	Brain Hippocampus Middle	brain
15	chr3:112354000-112359000	Flanking Active TSS	NH-A	brain
16	chr3:112354000-112359200	Weak transcription	Fetal Brain Female	brain
17	chr3:112354000-112360600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr3:112354200-112357800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:112354200-112358000	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr3:112354200-112358200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:112354400-112356800	Active TSS	NHLF	lung
22	chr3:112354400-112357800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:112354400-112357800	Active TSS	HSMMtube	muscle
24	chr3:112354400-112359000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:112354600-112359400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:112354800-112356600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:112354800-112356600	Flanking Active TSS	Rectal Smooth Muscle	rectum
28	chr3:112354800-112357200	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:112354800-112357600	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr3:112354800-112358600	Weak transcription	NHEK	skin
31	chr3:112354800-112359000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:112354800-112359000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:112354800-112359000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:112354800-112360000	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr3:112355000-112358600	Flanking Active TSS	Colon Smooth Muscle	Colon
36	chr3:112355000-112358800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr3:112355000-112359000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:112355200-112356600	Active TSS	A549	lung
39	chr3:112355200-112357000	Active TSS	Right Atrium	heart
40	chr3:112355200-112358400	Weak transcription	HUVEC	blood vessel
41	chr3:112355400-112356600	Active TSS	Right Ventricle	heart
42	chr3:112355400-112358400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:112355400-112359600	Active TSS	Colonic Mucosa	Colon
44	chr3:112355600-112356800	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr3:112355600-112356800	Flanking Active TSS	Fetal Lung	lung
46	chr3:112355600-112357000	Active TSS	Left Ventricle	heart
47	chr3:112355600-112358600	Enhancers	Ovary	ovary
48	chr3:112355800-112356600	Enhancers	Fetal Heart	heart
49	chr3:112355800-112357200	Active TSS	NHDF-Ad	bronchial
50	chr3:112355800-112357400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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