Variant report

Variant	rs3844384
Chromosome Location	chr13:93644310-93644311
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12428211	0.85[ASN][1000 genomes]
rs1335319	0.85[ASN][1000 genomes]
rs3843029	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3858832	0.88[ASN][1000 genomes]
rs3858833	0.80[ASN][1000 genomes]
rs7140006	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7985281	0.81[ASN][1000 genomes]
rs7990129	0.81[ASN][1000 genomes]
rs8000706	0.85[ASN][1000 genomes]
rs9561179	1.00[CEU][hapmap]
rs9561207	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900910	chr13:93582208-93680065	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2756050	chr13:93614714-93657802	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93638800-93645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:93642200-93646000	Weak transcription	HMEC	breast
3	chr13:93642400-93646000	Weak transcription	NHEK	skin
4	chr13:93643200-93645000	Enhancers	HSMM	muscle
5	chr13:93643600-93644800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:93643800-93644600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:93643800-93644600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:93643800-93644600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:93643800-93644600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:93643800-93644600	Enhancers	NH-A	brain
11	chr13:93643800-93644800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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