Variant report

Variant	rs3845362
Chromosome Location	chr1:75885158-75885159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493575	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12408190	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12408226	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12410333	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12411159	0.85[AMR][1000 genomes]
rs17096851	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17096888	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17584397	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17644957	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1857354	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1858630	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1858631	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1913118	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1936359	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3899859	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58890548	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60194830	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74089232	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74089237	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74089238	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74089245	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv3441748	chr1:75866980-75890018	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1011915	chr1:75879330-75934553	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3845362	SLC44A5	cis	Heart Left Ventricle	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75883800-75889000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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