Variant report

Variant	rs3845632
Chromosome Location	chr2:189648968-189648969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11679794	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11686942	0.82[AMR][1000 genomes]
rs12620233	0.82[AMR][1000 genomes]
rs12624203	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13020633	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13026165	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1354907	0.80[AMR][1000 genomes]
rs1518012	0.84[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1518013	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1518014	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1568235	0.81[AFR][1000 genomes]
rs17354592	0.83[ASN][1000 genomes]
rs17355123	1.00[ASN][1000 genomes]
rs17708980	0.83[ASN][1000 genomes]
rs17709022	0.83[ASN][1000 genomes]
rs17709220	1.00[ASN][1000 genomes]
rs17760082	1.00[ASN][1000 genomes]
rs17760389	1.00[ASN][1000 genomes]
rs17760712	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs17760857	0.91[ASN][1000 genomes]
rs2138959	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2138960	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2708209	0.82[CEU][hapmap]
rs4667244	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56017382	1.00[ASN][1000 genomes]
rs56241568	0.91[ASN][1000 genomes]
rs61710456	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6710589	0.82[EUR][1000 genomes]
rs6711038	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6744781	0.82[AMR][1000 genomes]
rs6748400	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72904626	0.91[ASN][1000 genomes]
rs72904633	0.84[ASN][1000 genomes]
rs72904642	1.00[ASN][1000 genomes]
rs72904645	1.00[ASN][1000 genomes]
rs72904654	1.00[ASN][1000 genomes]
rs72904656	1.00[ASN][1000 genomes]
rs72904657	1.00[ASN][1000 genomes]
rs7587646	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7590689	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7598731	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs781276	0.91[ASN][1000 genomes]
rs981265	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875606	chr2:189579045-189688463	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv875607	chr2:189579045-189711790	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1008847	chr2:189603961-189769705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv997454	chr2:189615728-189770133	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1002175	chr2:189615728-189776301	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189631600-189650000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:189641000-189649000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:189642400-189650000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:189645200-189650000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:189646200-189650400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:189646400-189650400	Weak transcription	Fetal Heart	heart
7	chr2:189648400-189649000	Weak transcription	HSMM	muscle
8	chr2:189648400-189649200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:189648400-189650400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:189648400-189650800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:189648400-189651200	Enhancers	Osteobl	bone
12	chr2:189648400-189653400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:189648600-189649200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:189648600-189649200	Enhancers	Colon Smooth Muscle	Colon
15	chr2:189648600-189649200	Enhancers	HMEC	breast
16	chr2:189648600-189649200	Enhancers	NHLF	lung
17	chr2:189648600-189649400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:189648600-189649400	Enhancers	NH-A	brain
19	chr2:189648600-189651600	Enhancers	NHDF-Ad	bronchial
20	chr2:189648800-189649000	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links