Variant report

Variant	rs3846050
Chromosome Location	chr3:112338424-112338425
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112337421..112339206-chr3:112358974..112360734,2	MCF-7	breast:
2	chr3:112338141..112343361-chr3:112351475..112354709,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1873571	1.00[CEU][hapmap]
rs2638022	1.00[CEU][hapmap]
rs2638031	1.00[CEU][hapmap]
rs2638037	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112282400-112340000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:112312600-112346200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:112312600-112347200	Weak transcription	Fetal Intestine Large	intestine
4	chr3:112316200-112342800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:112318000-112341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:112327800-112340600	Weak transcription	Fetal Kidney	kidney
7	chr3:112329600-112341800	Strong transcription	HSMM	muscle
8	chr3:112330400-112346800	Strong transcription	NHLF	lung
9	chr3:112331200-112351600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:112331400-112354800	Weak transcription	Psoas Muscle	Psoas
11	chr3:112332800-112339000	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr3:112335000-112340000	Weak transcription	Aorta	Aorta
13	chr3:112335200-112339800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:112335200-112340400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:112335200-112342200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:112335200-112345400	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:112336000-112342000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:112336200-112342000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:112336200-112347400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:112336200-112351600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:112336400-112341200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:112336400-112342000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:112336400-112346800	Weak transcription	Fetal Stomach	stomach
24	chr3:112336600-112351400	Weak transcription	Fetal Lung	lung
25	chr3:112336600-112355800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:112337000-112340000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:112337000-112346800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:112337400-112339000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:112337400-112339200	Genic enhancers	Osteobl	bone
30	chr3:112337600-112338800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:112337600-112339000	Genic enhancers	A549	lung
32	chr3:112337600-112340000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:112337600-112340000	Weak transcription	Ovary	ovary
34	chr3:112337800-112338600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:112337800-112338600	Enhancers	GM12878-XiMat	blood
36	chr3:112337800-112338600	Enhancers	HUVEC	blood vessel
37	chr3:112337800-112338600	Enhancers	K562	blood
38	chr3:112337800-112338600	Genic enhancers	NH-A	brain
39	chr3:112337800-112338800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:112337800-112338800	Genic enhancers	Muscle Satellite Cultured Cells	--
41	chr3:112337800-112340600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:112338000-112338800	Enhancers	NHDF-Ad	bronchial
43	chr3:112338000-112339200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:112338000-112340000	Weak transcription	Adipose Nuclei	Adipose
45	chr3:112338000-112340200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:112338000-112349400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:112338200-112338800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr3:112338200-112338800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:112338200-112338800	Enhancers	Colon Smooth Muscle	Colon
50	chr3:112338400-112340000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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