Variant report

Variant	rs3846237
Chromosome Location	chr4:160744841-160744842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10031882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12643938	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13148410	0.84[ASN][1000 genomes]
rs1457807	0.82[ASN][1000 genomes]
rs17038961	0.84[ASN][1000 genomes]
rs2137198	0.84[ASN][1000 genomes]
rs2348628	0.82[ASN][1000 genomes]
rs2348634	0.84[ASN][1000 genomes]
rs2348987	0.82[ASN][1000 genomes]
rs28842235	0.81[ASN][1000 genomes]
rs28888213	0.88[ASN][1000 genomes]
rs34487331	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856997	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856999	0.89[ASN][1000 genomes]
rs3911549	0.89[ASN][1000 genomes]
rs4034682	0.82[ASN][1000 genomes]
rs4321587	0.84[ASN][1000 genomes]
rs4563456	0.84[ASN][1000 genomes]
rs4635771	0.84[ASN][1000 genomes]
rs62333021	0.88[ASN][1000 genomes]
rs62333023	0.89[ASN][1000 genomes]
rs62333027	0.82[ASN][1000 genomes]
rs62333043	0.84[ASN][1000 genomes]
rs6833801	0.82[ASN][1000 genomes]
rs6856039	0.81[ASN][1000 genomes]
rs6856220	0.81[ASN][1000 genomes]
rs6857955	0.88[ASN][1000 genomes]
rs72980872	0.88[ASN][1000 genomes]
rs733095	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7688677	0.82[ASN][1000 genomes]
rs9995691	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880358	chr4:160694415-161575183	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv595814	chr4:160705097-160834831	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv461696	chr4:160708061-160834831	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv595815	chr4:160708061-160834831	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029076	chr4:160716044-160841619	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3410733	chr4:160731302-160747225	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1030555	chr4:160731749-160793323	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3437637	chr4:160731752-160746650	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160744400-160745000	Enhancers	HMEC	breast
2	chr4:160744400-160745600	Enhancers	NH-A	brain
3	chr4:160744400-160746200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:160744600-160745400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:160744600-160745400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:160744600-160745400	Enhancers	HSMMtube	muscle
7	chr4:160744600-160745600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:160744600-160745600	Enhancers	HSMM	muscle

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