Variant report

Variant	rs3846694
Chromosome Location	chr5:107166502-107166503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10479411	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11745018	0.80[MEX][hapmap]
rs2195941	0.83[MEX][hapmap]
rs3843494	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3846696	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3926991	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895254	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7728277	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3846694	FKBP5	trans	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107144400-107167600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107157200-107166600	Weak transcription	NHDF-Ad	bronchial
3	chr5:107161600-107167000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107162000-107167400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:107162200-107167200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:107162600-107166800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:107162600-107167200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:107162600-107167600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:107162800-107166600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:107166400-107166600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:107166400-107168000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:107166400-107168600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links