Variant report

Variant	rs3847122
Chromosome Location	chr7:80766407-80766408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10282195	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11767232	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11768393	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11768454	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11973996	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11978732	0.83[CHD][hapmap]
rs11980049	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11982217	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11983345	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11984187	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16886981	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16887030	0.83[GIH][hapmap];0.86[MEX][hapmap]
rs17154836	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17154873	0.83[GIH][hapmap];1.00[MEX][hapmap]
rs2367225	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28470599	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3914075	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4606001	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58500032	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60103966	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60640315	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60859227	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73374738	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73384446	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73384451	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73384485	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73384500	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73386404	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7812231	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv888555	chr7:80695828-80766407	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80763200-80780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links