Variant report

Variant	rs3847375
Chromosome Location	chr10:21567565-21567566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:21567445..21568280-chr10:21784469..21785674,3	MCF-7	breast:
2	chr10:21562312..21564051-chr10:21566271..21567877,2	K562	blood:
3	chr10:21567453..21568536-chr10:21784360..21786003,5	MCF-7	breast:
4	chr10:21567449..21568075-chr16:57157662..57158182,2	MCF-7	breast:
5	chr10:21566105..21568881-chr10:21783134..21785349,2	MCF-7	breast:
6	chr10:21566287..21568979-chr10:21785002..21786704,2	MCF-7	breast:
7	chr10:21567039..21568307-chr10:21783578..21784351,3	MCF-7	breast:
8	chr10:21560918..21562643-chr10:21566153..21567946,2	MCF-7	breast:
9	chr10:21567529..21568306-chr10:23356802..23357328,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction
ENSG00000140848	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10828225	1.00[CHB][hapmap]
rs10828229	0.93[ASN][1000 genomes]
rs12262659	1.00[CHB][hapmap]
rs7085330	1.00[CHB][hapmap]
rs7898819	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910610	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Schizophrenia	22885689	GWAS catalog

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21558200-21567600	Weak transcription	Ovary	ovary
2	chr10:21560200-21567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:21560400-21567600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:21560400-21567800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:21560400-21567800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:21561800-21574200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:21562200-21568000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:21562400-21567600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:21562600-21567800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:21562800-21578000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:21563200-21574400	Weak transcription	Hela-S3	cervix
12	chr10:21564200-21581600	Weak transcription	Right Atrium	heart
13	chr10:21564600-21567600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:21564600-21569200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:21566200-21567600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:21566200-21567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:21566200-21567800	Weak transcription	HMEC	breast
18	chr10:21566400-21570600	Enhancers	A549	lung
19	chr10:21567000-21571600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:21567000-21576600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr10:21567200-21567600	Weak transcription	NHLF	lung
22	chr10:21567200-21567800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:21567400-21567600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:21567400-21567600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr10:21567400-21568000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:21567400-21568200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr10:21567400-21568400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr10:21567400-21582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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