Variant report

Variant	rs3851301
Chromosome Location	chr1:217273355-217273356
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11117772	0.83[CEU][hapmap];0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs1166354	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12026424	0.92[JPT][hapmap]
rs12030179	0.92[JPT][hapmap]
rs12033461	0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12034683	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12565946	0.92[JPT][hapmap]
rs1890550	0.83[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs35118047	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72743303	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7514298	0.83[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7532682	0.83[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs830307	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs830318	0.90[ASN][1000 genomes]
rs987445	0.83[CEU][hapmap];0.89[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217270600-217278200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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