Variant report

Variant	rs3852696
Chromosome Location	chr16:70463921-70463922
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70435585..70438513-chr16:70463372..70466196,4	K562	blood:
2	chr16:70425399..70428053-chr16:70462305..70465036,2	MCF-7	breast:
3	chr16:70461694..70464050-chr16:70530220..70533106,2	K562	blood:
4	chr16:70446187..70457827-chr16:70459568..70470659,26	K562	blood:
5	chr16:70381202..70383601-chr16:70463470..70465382,2	K562	blood:
6	chr16:70437013..70440067-chr16:70462393..70466171,3	K562	blood:
7	chr16:70463386..70464886-chr16:70471088..70473169,2	MCF-7	breast:
8	chr16:70453838..70456062-chr16:70463491..70466263,2	MCF-7	breast:
9	chr16:70462373..70465146-chr16:70559441..70561482,2	MCF-7	breast:
10	chr16:70412457..70415217-chr16:70462322..70464517,2	MCF-7	breast:
11	chr16:70461008..70469152-chr16:70556160..70559876,10	K562	blood:
12	chr16:70440964..70444815-chr16:70460997..70465510,6	K562	blood:
13	chr16:70460964..70466132-chr16:70555553..70559173,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157350	Chromatin interaction
ENSG00000103051	Chromatin interaction
ENSG00000260111	Chromatin interaction
ENSG00000189091	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11647932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11649560	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12149660	1.00[CEU][hapmap]
rs12325419	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs35949039	0.83[AFR][1000 genomes]
rs59447375	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71401806	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70448000-70464200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr16:70453800-70470800	Genic enhancers	Fetal Intestine Small	intestine
3	chr16:70458000-70468400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr16:70460000-70464400	Weak transcription	Dnd41	blood
5	chr16:70460400-70467000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr16:70460800-70465400	Enhancers	Lung	lung
7	chr16:70460800-70465600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:70460800-70465600	Enhancers	Left Ventricle	heart
9	chr16:70460800-70467400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr16:70460800-70467800	Enhancers	Spleen	Spleen
11	chr16:70460800-70469200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr16:70461000-70464400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr16:70461000-70465400	Enhancers	Psoas Muscle	Psoas
14	chr16:70461000-70465600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr16:70461000-70465800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr16:70461000-70468400	Enhancers	Placenta	Placenta
17	chr16:70461200-70464000	Enhancers	Fetal Intestine Large	intestine
18	chr16:70461400-70464000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr16:70461400-70464000	Enhancers	Fetal Stomach	stomach
20	chr16:70461400-70464200	Enhancers	Gastric	stomach
21	chr16:70461400-70465000	Enhancers	NHLF	lung
22	chr16:70461400-70465600	Enhancers	Stomach Mucosa	stomach
23	chr16:70461400-70467600	Enhancers	Fetal Thymus	thymus
24	chr16:70461600-70464200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr16:70461600-70464400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr16:70461600-70464400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr16:70461600-70464800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr16:70461600-70464800	Enhancers	Brain Substantia Nigra	brain
29	chr16:70461600-70465000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr16:70461600-70465200	Enhancers	Primary B cells from peripheral blood	blood
31	chr16:70461600-70465400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr16:70461600-70465400	Enhancers	Liver	Liver
33	chr16:70461600-70465400	Enhancers	Pancreas	Pancrea
34	chr16:70461600-70465400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr16:70461600-70465400	Enhancers	Right Ventricle	heart
36	chr16:70461600-70465400	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr16:70461600-70466600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr16:70461600-70467600	Enhancers	H1 Cell Line	embryonic stem cell
39	chr16:70461800-70464400	Enhancers	Primary T cells from cord blood	blood
40	chr16:70461800-70464800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr16:70461800-70465000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr16:70461800-70465400	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr16:70461800-70468800	Enhancers	Primary T cells fromperipheralblood	blood
44	chr16:70462000-70464200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr16:70462400-70465800	Enhancers	Brain Hippocampus Middle	brain
46	chr16:70462600-70464000	Enhancers	Fetal Muscle Leg	muscle
47	chr16:70462600-70464400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr16:70462600-70465400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr16:70462600-70465400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr16:70462600-70465600	Enhancers	Cortex derived primary cultured neurospheres	brain

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