Variant report

Variant	rs3852729
Chromosome Location	chr16:82668534-82668535
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12925602	0.85[JPT][hapmap]
rs3852728	0.85[LWK][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833305	chr16:82563888-82722084	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1062787	chr16:82601618-82676019	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv542998	chr16:82601618-82676019	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82662600-82669600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:82662800-82668800	Enhancers	Fetal Muscle Leg	muscle
3	chr16:82663200-82675000	Enhancers	Right Ventricle	heart
4	chr16:82663400-82672800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:82664000-82669200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr16:82664000-82674800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr16:82664400-82676400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:82665000-82670200	Enhancers	Left Ventricle	heart
9	chr16:82665400-82671800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:82666600-82669200	Enhancers	Psoas Muscle	Psoas
11	chr16:82667200-82668600	Enhancers	Brain Cingulate Gyrus	brain
12	chr16:82667200-82668800	Enhancers	NHLF	lung
13	chr16:82667200-82669400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:82667200-82672200	Enhancers	HUVEC	blood vessel
15	chr16:82667400-82669000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr16:82667400-82669000	Enhancers	NHDF-Ad	bronchial
17	chr16:82667400-82669200	Weak transcription	Stomach Mucosa	stomach
18	chr16:82667400-82669200	Enhancers	Osteobl	bone
19	chr16:82667400-82670200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr16:82667600-82669000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:82667600-82669000	Enhancers	Hela-S3	cervix
22	chr16:82667600-82669200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr16:82667600-82669600	Enhancers	Esophagus	oesophagus
24	chr16:82667600-82669600	Enhancers	Right Atrium	heart
25	chr16:82667600-82670000	Enhancers	Aorta	Aorta
26	chr16:82667600-82670400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr16:82667600-82670600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr16:82667800-82668600	Enhancers	Fetal Thymus	thymus
29	chr16:82667800-82668600	Flanking Active TSS	HSMM	muscle
30	chr16:82667800-82668800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr16:82667800-82669000	Flanking Active TSS	HSMMtube	muscle
32	chr16:82667800-82671000	Enhancers	Duodenum Mucosa	Duodenum
33	chr16:82667800-82672800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr16:82668000-82669400	Weak transcription	Colonic Mucosa	Colon
35	chr16:82668000-82670600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr16:82668000-82671400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr16:82668000-82671400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr16:82668000-82671600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr16:82668000-82673000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr16:82668200-82668600	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr16:82668200-82668600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr16:82668200-82668600	Enhancers	Stomach Smooth Muscle	stomach
43	chr16:82668200-82669000	Enhancers	NHEK	skin
44	chr16:82668200-82669200	Enhancers	NH-A	brain
45	chr16:82668200-82671600	Weak transcription	Brain Germinal Matrix	brain
46	chr16:82668200-82671800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr16:82668200-82672400	Weak transcription	Fetal Heart	heart
48	chr16:82668200-82672800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr16:82668200-82673600	Weak transcription	Brain Substantia Nigra	brain
50	chr16:82668200-82675400	Enhancers	HMEC	breast

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