Variant report

Variant	rs3852785
Chromosome Location	chr16:72198642-72198643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11640722	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11641721	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11645898	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11646364	0.81[AMR][1000 genomes]
rs11648479	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17603936	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28419077	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34656481	0.85[EUR][1000 genomes]
rs34832584	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35370634	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3812985	0.88[EUR][1000 genomes]
rs4788459	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4788463	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4788605	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4788611	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4788614	0.88[EUR][1000 genomes]
rs4788615	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55824906	0.81[AMR][1000 genomes]
rs55955726	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7206422	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72787046	0.81[AMR][1000 genomes]
rs72787056	0.81[AMR][1000 genomes]
rs72787060	0.81[AMR][1000 genomes]
rs72787070	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72787077	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72787078	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72787085	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72787091	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72787093	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72787094	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72791112	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72791115	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72791117	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72791120	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72791121	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7499467	0.81[AMR][1000 genomes]
rs8047881	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	esv2758430	chr16:71976344-72274347	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	esv2758654	chr16:71976344-72274347	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv428329	chr16:71976344-72274347	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv534588	chr16:72078262-72287230	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72194600-72206200	Weak transcription	Primary B cells from cord blood	blood
2	chr16:72196600-72201200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr16:72198200-72199000	Enhancers	Fetal Brain Male	brain
4	chr16:72198400-72198800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr16:72198400-72199000	Enhancers	Fetal Brain Female	brain
6	chr16:72198400-72199400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:72198600-72198800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr16:72198600-72198800	Enhancers	Adipose Nuclei	Adipose

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