Variant report

Variant	rs3853124
Chromosome Location	chr10:49822635-49822636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10857610	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857611	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101403	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101405	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3844492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3863273	0.80[EUR][1000 genomes]
rs4114457	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4558090	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914542	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49814200-49823400	Enhancers	NHDF-Ad	bronchial
3	chr10:49815000-49823000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:49819400-49823200	Enhancers	HMEC	breast
5	chr10:49819600-49822800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:49819600-49823200	Enhancers	HSMM	muscle
7	chr10:49820000-49823000	Enhancers	Osteobl	bone
8	chr10:49820200-49823200	Enhancers	NHLF	lung
9	chr10:49820600-49822800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:49820600-49823000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:49821000-49823400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:49821400-49823400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:49821600-49822800	Enhancers	Brain Substantia Nigra	brain
14	chr10:49822000-49823200	Enhancers	HSMMtube	muscle
15	chr10:49822200-49822800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:49822600-49822800	Enhancers	NH-A	brain
17	chr10:49822600-49823000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:49822600-49823400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:49822600-49823600	Flanking Active TSS	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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