Variant report

Variant	rs3853210
Chromosome Location	chr5:95845708-95845709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11135464	0.82[EUR][1000 genomes]
rs11135465	0.82[EUR][1000 genomes]
rs11739740	0.81[EUR][1000 genomes]
rs12517435	0.81[EUR][1000 genomes]
rs12519934	0.81[EUR][1000 genomes]
rs17473246	0.85[EUR][1000 genomes]
rs17473575	0.82[EUR][1000 genomes]
rs35335212	0.82[EUR][1000 genomes]
rs35758052	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1026484	chr5:95759910-95961518	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95838400-95849200	Enhancers	Hela-S3	cervix
2	chr5:95844200-95846400	Enhancers	Fetal Intestine Large	intestine
3	chr5:95844200-95846400	Enhancers	Fetal Intestine Small	intestine
4	chr5:95844200-95846800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95844200-95846800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:95844600-95852400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:95844800-95846400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:95845000-95846000	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr5:95845000-95846400	Enhancers	Osteobl	bone
10	chr5:95845200-95845800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:95845200-95846200	Enhancers	NHDF-Ad	bronchial
12	chr5:95845200-95846400	Enhancers	NHLF	lung
13	chr5:95845400-95845800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:95845400-95845800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:95845600-95845800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:95845600-95846200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:95845600-95846200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:95845600-95846200	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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