Variant report

Variant	rs3853761
Chromosome Location	chr10:49667795-49667796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49667304..49669133-chr10:49726390..49728865,2	K562	blood:
2	chr10:49656960..49659502-chr10:49666267..49668119,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10745275	0.93[AFR][1000 genomes]
rs10776604	0.95[AFR][1000 genomes]
rs10776605	0.95[AFR][1000 genomes]
rs1867574	0.97[AFR][1000 genomes]
rs1867575	0.98[AFR][1000 genomes]
rs3867448	0.97[AFR][1000 genomes]
rs3867449	0.97[AFR][1000 genomes]
rs3867450	0.97[AFR][1000 genomes]
rs4012794	0.94[AFR][1000 genomes]
rs4012795	0.97[AFR][1000 genomes]
rs7478027	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49652000-49673000	Weak transcription	HMEC	breast
2	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
5	chr10:49661200-49669200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:49661800-49668600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:49662200-49671800	Weak transcription	Aorta	Aorta
8	chr10:49662400-49672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:49662600-49671800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:49663200-49668000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:49663400-49667800	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:49663400-49668000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:49664800-49669600	Weak transcription	Osteobl	bone
14	chr10:49664800-49671200	Weak transcription	Right Ventricle	heart
15	chr10:49664800-49671400	Weak transcription	Adipose Nuclei	Adipose
16	chr10:49664800-49671400	Weak transcription	NHDF-Ad	bronchial
17	chr10:49665200-49671600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:49665200-49673400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:49665400-49670800	Weak transcription	Ovary	ovary
20	chr10:49665400-49671200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:49665400-49671200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:49665400-49672200	Weak transcription	Spleen	Spleen
23	chr10:49665400-49675000	Weak transcription	HUVEC	blood vessel
24	chr10:49665800-49671200	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:49665800-49671200	Weak transcription	Fetal Heart	heart
26	chr10:49665800-49671400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:49665800-49671400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:49665800-49671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:49665800-49672400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:49666000-49668400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr10:49666000-49668400	Strong transcription	NHLF	lung
32	chr10:49666200-49668800	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr10:49666400-49668200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:49666400-49668200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:49666400-49671400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:49666600-49668000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:49666600-49671400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:49667200-49668400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:49667200-49671000	Weak transcription	Fetal Stomach	stomach
40	chr10:49667400-49668000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr10:49667400-49668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:49667400-49668200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:49667400-49668800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:49667600-49667800	Enhancers	K562	blood
45	chr10:49667600-49668200	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:49667600-49670800	Strong transcription	HSMM	muscle

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