Variant report

Variant	rs3857557
Chromosome Location	chr6:33476576-33476577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11752501	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11752508	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11755542	0.85[EUR][1000 genomes]
rs11757035	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11757081	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11757738	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11759461	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35131737	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4428487	0.85[ASN][1000 genomes]
rs4713632	0.88[ASN][1000 genomes]
rs55659258	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55683509	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55782090	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56002904	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56069946	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62405860	0.84[EUR][1000 genomes]
rs62405861	0.85[EUR][1000 genomes]
rs62405865	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62405866	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62405867	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62405869	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62405887	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62405891	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62405895	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405896	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62405898	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62405899	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62405926	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6911036	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942274	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs769051	0.88[ASN][1000 genomes]
rs7743060	0.82[ASN][1000 genomes]
rs7743064	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743178	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743445	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7747216	0.88[ASN][1000 genomes]
rs7748370	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296092	0.85[ASN][1000 genomes]
rs9366823	0.85[ASN][1000 genomes]
rs9380362	0.85[ASN][1000 genomes]
rs9380364	0.88[ASN][1000 genomes]
rs9380366	0.85[ASN][1000 genomes]
rs9380367	0.88[ASN][1000 genomes]
rs9394153	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33473800-33476800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:33474200-33476800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:33474200-33476800	Weak transcription	Adipose Nuclei	Adipose
4	chr6:33474200-33477000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:33474400-33476800	Weak transcription	Right Atrium	heart
6	chr6:33474400-33476800	Weak transcription	K562	blood
7	chr6:33474400-33477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:33474400-33481200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:33474600-33477000	Weak transcription	Fetal Heart	heart
10	chr6:33475200-33476600	Enhancers	GM12878-XiMat	blood
11	chr6:33476000-33477200	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:33476200-33476600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:33476200-33476600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:33476200-33476800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:33476400-33476800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:33476400-33477000	Weak transcription	Spleen	Spleen

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