Variant report

Variant	rs3857864
Chromosome Location	chr7:80757114-80757115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10085759	0.87[EUR][1000 genomes]
rs10224681	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12533139	0.87[EUR][1000 genomes]
rs1528389	0.84[ASN][1000 genomes]
rs3847120	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3914077	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3914079	0.87[EUR][1000 genomes]
rs3915317	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4096939	0.87[EUR][1000 genomes]
rs6467571	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6942673	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6956926	0.83[AFR][1000 genomes]
rs6958657	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6968832	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7357269	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv888555	chr7:80695828-80766407	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80745200-80762600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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