Variant report

Variant	rs3860513
Chromosome Location	chr3:180368253-180368254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2338435	1.00[ASN][1000 genomes]
rs58906660	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61111878	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62292369	1.00[ASN][1000 genomes]
rs62292371	1.00[ASN][1000 genomes]
rs6443700	1.00[CHD][hapmap]
rs6766929	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6769457	0.94[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772636	0.86[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7627857	1.00[CHD][hapmap]
rs9846084	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9869523	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999338	chr3:180348143-181160251	Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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