Variant report

Variant	rs3862605
Chromosome Location	chr11:121329041-121329042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:121322754..121325541-chr11:121327812..121329887,2	K562	blood:
2	chr11:121328578..121330847-chr11:121337698..121340235,2	MCF-7	breast:
3	chr11:121306080..121308554-chr11:121327540..121330360,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137642	Chromatin interaction
ENSG00000246790	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11218301	0.81[MEX][hapmap];1.00[YRI][hapmap]
rs3824963	0.86[AFR][1000 genomes]
rs7105365	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121323600-121334600	Weak transcription	Aorta	Aorta
2	chr11:121323800-121335000	Weak transcription	Left Ventricle	heart
3	chr11:121323800-121336800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:121323800-121336800	Weak transcription	Gastric	stomach
5	chr11:121324200-121335200	Weak transcription	Right Atrium	heart
6	chr11:121324600-121330000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:121324800-121330000	Weak transcription	Fetal Lung	lung
8	chr11:121324800-121330600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:121324800-121333600	Weak transcription	NHEK	skin
10	chr11:121324800-121333800	Weak transcription	HMEC	breast
11	chr11:121325000-121330000	Weak transcription	Fetal Stomach	stomach
12	chr11:121325000-121330000	Weak transcription	Thymus	Thymus
13	chr11:121325000-121330200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:121325000-121330600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:121325000-121331600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:121325000-121333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:121325000-121335200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:121325000-121336800	Weak transcription	Colonic Mucosa	Colon
19	chr11:121325200-121331600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:121325400-121330000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:121325400-121338000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:121325600-121329600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr11:121325600-121330000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:121325600-121335000	Weak transcription	Esophagus	oesophagus
25	chr11:121326000-121330000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:121326000-121330000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:121326000-121330200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:121326200-121329800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:121326200-121330000	Genic enhancers	Primary T cells fromperipheralblood	blood
30	chr11:121326200-121332800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:121326200-121334600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:121326200-121335200	Weak transcription	Fetal Brain Male	brain
33	chr11:121326400-121329600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:121326400-121329600	Weak transcription	Fetal Thymus	thymus
35	chr11:121326400-121329800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr11:121326400-121329800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:121326400-121330000	Weak transcription	Brain Angular Gyrus	brain
38	chr11:121326800-121329400	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr11:121326800-121330600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr11:121326800-121330600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:121327000-121330600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr11:121327000-121330800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:121327200-121329200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:121327200-121329600	Weak transcription	Stomach Mucosa	stomach
45	chr11:121327200-121330000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:121327200-121330200	Weak transcription	Brain Anterior Caudate	brain
47	chr11:121327200-121334400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:121327400-121329200	Weak transcription	Fetal Intestine Small	intestine
49	chr11:121327400-121329600	Weak transcription	Fetal Intestine Large	intestine
50	chr11:121327400-121330000	Weak transcription	Brain Hippocampus Middle	brain

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