Variant report

Variant	rs3862787
Chromosome Location	chr11:86230199-86230200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86227984..86231236-chr11:86233662..86235563,3	MCF-7	breast:
2	chr11:86209488..86213127-chr11:86228780..86231761,3	K562	blood:
3	chr11:86224834..86227420-chr11:86229553..86231855,2	K562	blood:
4	chr11:86225920..86228246-chr11:86229553..86231799,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11501724	0.83[AFR][1000 genomes]
rs11501841	1.00[AFR][1000 genomes]
rs12269737	1.00[AFR][1000 genomes]
rs12269800	0.81[AFR][1000 genomes]
rs12271274	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277137	1.00[AFR][1000 genomes]
rs12288171	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291626	0.83[AFR][1000 genomes]
rs12293152	1.00[AFR][1000 genomes]
rs3889658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86220000-86230600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
3	chr11:86223200-86230600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:86224800-86232400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:86225000-86230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:86225400-86231000	Enhancers	NHEK	skin
9	chr11:86225400-86233200	Enhancers	HUVEC	blood vessel
10	chr11:86225600-86230800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:86225800-86231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:86226200-86231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:86226400-86231400	Enhancers	Osteobl	bone
14	chr11:86227000-86230200	Weak transcription	Adipose Nuclei	Adipose
15	chr11:86227000-86230800	Weak transcription	Spleen	Spleen
16	chr11:86227000-86234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:86227000-86235000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:86227000-86235600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:86227400-86230200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:86227400-86230400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:86227800-86231800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:86228000-86231000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:86228000-86232000	Enhancers	Hela-S3	cervix
24	chr11:86228200-86231000	Enhancers	Fetal Intestine Large	intestine
25	chr11:86228600-86231200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:86229200-86230200	Enhancers	Stomach Mucosa	stomach
27	chr11:86229200-86231000	Enhancers	Fetal Kidney	kidney
28	chr11:86229200-86231400	Enhancers	Fetal Muscle Leg	muscle
29	chr11:86229200-86231800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr11:86229200-86232000	Enhancers	Fetal Lung	lung
31	chr11:86229400-86231400	Enhancers	Fetal Brain Female	brain
32	chr11:86229400-86231400	Enhancers	Fetal Stomach	stomach
33	chr11:86229400-86231800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:86229400-86231800	Enhancers	Fetal Brain Male	brain
35	chr11:86229400-86232200	Enhancers	Fetal Heart	heart
36	chr11:86229600-86230400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:86229600-86230800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:86229600-86231000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:86229600-86231000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:86229600-86231000	Enhancers	Placenta	Placenta
41	chr11:86229600-86231000	Enhancers	HMEC	breast
42	chr11:86229600-86231000	Enhancers	HSMMtube	muscle
43	chr11:86229600-86231200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:86229600-86231200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:86229600-86231200	Enhancers	Small Intestine	intestine
46	chr11:86229600-86231400	Enhancers	NH-A	brain
47	chr11:86229600-86231400	Enhancers	NHDF-Ad	bronchial
48	chr11:86229600-86231600	Enhancers	Brain Germinal Matrix	brain
49	chr11:86229600-86232200	Enhancers	Right Ventricle	heart
50	chr11:86229800-86230600	Weak transcription	Fetal Intestine Small	intestine

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