Variant report

Variant	rs386372105
Chromosome Location	chr10:94607593-94607594
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr10:94607292-94609789	SK-N-SH	brain:	n/a	n/a
2	MAZ	chr10:94607233-94607595	HepG2	liver:	n/a	n/a
3	FOXA1	chr10:94607061-94607621	HepG2	liver:	n/a	n/a
4	ZNF384	chr10:94607386-94607667	GM12878	blood:	n/a	n/a
5	POLR2A	chr10:94606677-94607609	K562	blood:	n/a	n/a
6	ZNF384	chr10:94607335-94607923	K562	blood:	n/a	n/a
7	E2F4	chr10:94607321-94608436	MCF10A-Er-Src	breast:	n/a	chr10:94608137-94608151 chr10:94608122-94608134 chr10:94608123-94608134
8	MAX	chr10:94606939-94607600	NB4	blood:	n/a	n/a
9	RCOR1	chr10:94606771-94609165	Hela-S3	cervix:	n/a	n/a
10	TCF7L2	chr10:94606743-94607647	Hela-S3	cervix:	n/a	chr10:94607365-94607381
11	HNF4A	chr10:94607344-94607729	HepG2	liver:	n/a	n/a
12	EP300	chr10:94607107-94607651	HepG2	liver:	n/a	chr10:94607337-94607351
13	CEBPB	chr10:94606808-94607680	Hela-S3	cervix:	n/a	chr10:94607150-94607161
14	MAZ	chr10:94607426-94609137	IMR90	lung:	n/a	chr10:94608427-94608436
15	ARID3A	chr10:94607190-94607759	HepG2	liver:	n/a	n/a
16	MYBL2	chr10:94607114-94607748	HepG2	liver:	n/a	n/a
17	HA-E2F1	chr10:94607325-94609231	MCF-7	breast:	n/a	chr10:94608137-94608151 chr10:94608122-94608134
18	EGR1	chr10:94607585-94609345	HCT-116	colon:	n/a	chr10:94608118-94608129 chr10:94608117-94608130 chr10:94608117-94608130 chr10:94608120-94608130 chr10:94608120-94608129 chr10:94608871-94608885 chr10:94608234-94608243 chr10:94608117-94608130 chr10:94608117-94608131 chr10:94608918-94608932 chr10:94608117-94608130 chr10:94608732-94608745 chr10:94608119-94608129 chr10:94608116-94608131 chr10:94608119-94608129 chr10:94608113-94608135
19	RXRA	chr10:94607188-94607788	HepG2	liver:	n/a	n/a
20	FOXA1	chr10:94607155-94607642	HepG2	liver:	n/a	n/a
21	GATA2	chr10:94607506-94608762	SH-SY5Y	brain:	n/a	n/a
22	RXRA	chr10:94607259-94607684	HepG2	liver:	n/a	n/a
23	POLR2A	chr10:94605616-94609119	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr10:94351135..94353608-chr10:94605711..94608172,2	K562	blood:
3	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
4	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
5	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
6	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000152804	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000138160	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000207496	Chromatin interaction
ENSG00000225118	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
2	chr10:94599600-94607600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:94600600-94607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:94602600-94607600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:94604200-94607600	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:94605400-94608000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr10:94605600-94607600	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:94606200-94607800	Weak transcription	Thymus	Thymus
9	chr10:94606600-94607600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:94606600-94607800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr10:94606600-94607800	Enhancers	GM12878-XiMat	blood
12	chr10:94606800-94607600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:94606800-94607600	Genic enhancers	K562	blood
14	chr10:94606800-94608000	Flanking Active TSS	Hela-S3	cervix
15	chr10:94607000-94607600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:94607000-94607600	Enhancers	Fetal Intestine Large	intestine
17	chr10:94607000-94607600	Enhancers	Dnd41	blood
18	chr10:94607000-94607800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:94607000-94607800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:94607000-94607800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:94607000-94607800	Bivalent Enhancer	NHEK	skin
22	chr10:94607200-94607600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:94607200-94607600	Enhancers	Primary T cells from cord blood	blood
24	chr10:94607200-94607600	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:94607200-94607600	Enhancers	Liver	Liver
26	chr10:94607200-94607600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:94607200-94607600	Enhancers	Fetal Intestine Small	intestine
28	chr10:94607200-94607600	Enhancers	Placenta	Placenta
29	chr10:94607200-94607600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:94607200-94607600	Enhancers	A549	lung
31	chr10:94607200-94607600	Enhancers	HSMM	muscle
32	chr10:94607200-94607600	Enhancers	Osteobl	bone
33	chr10:94607200-94607800	Enhancers	HMEC	breast
34	chr10:94607200-94607800	Enhancers	HUVEC	blood vessel
35	chr10:94607200-94608000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr10:94607200-94608000	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr10:94607200-94608000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:94607200-94608000	Enhancers	Stomach Mucosa	stomach
39	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
40	chr10:94607400-94607600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:94607400-94607600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
42	chr10:94607400-94607600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr10:94607400-94607600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr10:94607400-94607600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:94607400-94607600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:94607400-94607600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:94607400-94607600	Enhancers	Adipose Nuclei	Adipose
48	chr10:94607400-94607600	Enhancers	Brain Angular Gyrus	brain
49	chr10:94607400-94607600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:94607400-94607600	Enhancers	Duodenum Smooth Muscle	Duodenum

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