Variant report

Variant	rs3864204
Chromosome Location	chr4:7368495-7368496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16835129	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv432556	chr4:7174993-7391948	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv878546	chr4:7285356-7376694	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv878547	chr4:7289113-7376694	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv878549	chr4:7295154-7376694	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv878551	chr4:7297506-7376694	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1003679	chr4:7319111-7449262	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv878553	chr4:7321511-7376694	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv878559	chr4:7353052-7376694	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1012289	chr4:7361958-7395292	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7366200-7370400	Enhancers	Fetal Brain Male	brain
2	chr4:7366200-7370400	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr4:7366400-7370400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr4:7366600-7370400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr4:7366800-7370400	Bivalent Enhancer	Fetal Stomach	stomach
6	chr4:7367200-7369000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:7367200-7370400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:7367400-7368600	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr4:7367600-7368600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:7367800-7369400	Flanking Active TSS	Brain Cingulate Gyrus	brain
11	chr4:7367800-7369600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:7368000-7368600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:7368000-7368600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:7368000-7368600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:7368000-7368600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:7368000-7368600	Enhancers	Stomach Smooth Muscle	stomach
17	chr4:7368000-7368800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:7368000-7368800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr4:7368000-7369200	Weak transcription	Ovary	ovary
20	chr4:7368200-7368600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:7368200-7368600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:7368200-7368800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:7368200-7369000	Weak transcription	Lung	lung
24	chr4:7368200-7369200	Bivalent Enhancer	Brain Angular Gyrus	brain
25	chr4:7368200-7369200	Enhancers	Fetal Brain Female	brain
26	chr4:7368200-7370400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:7368200-7383000	Weak transcription	Right Atrium	heart
28	chr4:7368400-7368800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr4:7368400-7368800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:7368400-7369200	Bivalent Enhancer	Fetal Lung	lung
31	chr4:7368400-7370200	Enhancers	Brain Substantia Nigra	brain
32	chr4:7368400-7370400	Enhancers	Brain Germinal Matrix	brain
33	chr4:7368400-7370400	Enhancers	Brain Hippocampus Middle	brain

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