Variant report

Variant	rs3864854
Chromosome Location	chr10:92784867-92784868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3852490	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7897249	0.84[AMR][1000 genomes]
rs9787573	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv430258	chr10:92770145-92817973	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv430256	chr10:92770145-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv430260	chr10:92778715-92821721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430259	chr10:92778715-92848304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92781200-92785800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:92782000-92785000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:92783800-92785000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:92784000-92785400	Enhancers	Brain Substantia Nigra	brain
5	chr10:92784200-92785000	Enhancers	Fetal Brain Female	brain
6	chr10:92784400-92785000	Enhancers	Brain Hippocampus Middle	brain
7	chr10:92784400-92790200	Weak transcription	Placenta	Placenta
8	chr10:92784400-92797800	Weak transcription	Aorta	Aorta
9	chr10:92784600-92785600	Weak transcription	Fetal Thymus	thymus
10	chr10:92784600-92796600	Weak transcription	Left Ventricle	heart
11	chr10:92784800-92785600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:92784800-92790000	Weak transcription	Dnd41	blood
13	chr10:92784800-92790800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:92784800-92792200	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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