Variant report

Variant	rs3865544
Chromosome Location	chr20:23973321-23973322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr20:23973008-23973368	GM12878	blood:	n/a	n/a
2	PAX5	chr20:23973117-23973351	GM12878	blood:	n/a	n/a
3	ZBTB33	chr20:23973105-23973363	K562	blood:	n/a	n/a
4	SPI1	chr20:23973128-23973364	K562	blood:	n/a	n/a
5	FOSL2	chr20:23973056-23973434	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
GGTLC1	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs2379298	0.82[EUR][1000 genomes]
rs2379299	0.82[EUR][1000 genomes]
rs2379300	0.82[EUR][1000 genomes]
rs28376354	0.82[EUR][1000 genomes]
rs28433532	0.82[EUR][1000 genomes]
rs28447541	0.82[EUR][1000 genomes]
rs28451540	0.82[EUR][1000 genomes]
rs28516591	0.82[EUR][1000 genomes]
rs28575651	0.82[EUR][1000 genomes]
rs28702491	0.82[EUR][1000 genomes]
rs28730969	0.82[EUR][1000 genomes]
rs3843775	0.82[EUR][1000 genomes]
rs3843776	0.82[EUR][1000 genomes]
rs3843777	0.82[EUR][1000 genomes]
rs4336010	0.82[EUR][1000 genomes]
rs4390824	0.82[EUR][1000 genomes]
rs4390830	0.86[EUR][1000 genomes]
rs4499504	0.82[EUR][1000 genomes]
rs4499505	0.82[EUR][1000 genomes]
rs4625985	0.82[EUR][1000 genomes]
rs56199073	0.82[EUR][1000 genomes]
rs6036606	0.82[EUR][1000 genomes]
rs6036607	0.82[EUR][1000 genomes]
rs6036609	0.82[EUR][1000 genomes]
rs6036610	0.82[EUR][1000 genomes]
rs6036611	0.82[EUR][1000 genomes]
rs6036612	0.82[EUR][1000 genomes]
rs6049300	0.82[EUR][1000 genomes]
rs6049301	0.82[EUR][1000 genomes]
rs6049302	0.82[EUR][1000 genomes]
rs6049303	0.82[EUR][1000 genomes]
rs6049304	0.82[EUR][1000 genomes]
rs6049305	0.82[EUR][1000 genomes]
rs6049306	0.82[EUR][1000 genomes]
rs6049307	0.82[EUR][1000 genomes]
rs6049308	0.82[EUR][1000 genomes]
rs6049309	0.82[EUR][1000 genomes]
rs6049310	0.82[EUR][1000 genomes]
rs6049311	0.82[EUR][1000 genomes]
rs6049312	0.82[EUR][1000 genomes]
rs6049313	0.82[EUR][1000 genomes]
rs6049315	0.82[EUR][1000 genomes]
rs6049316	0.82[EUR][1000 genomes]
rs6049317	0.82[EUR][1000 genomes]
rs6049318	0.82[EUR][1000 genomes]
rs6049319	0.82[EUR][1000 genomes]
rs6049321	0.82[EUR][1000 genomes]
rs6049322	0.82[EUR][1000 genomes]
rs6049323	0.82[EUR][1000 genomes]
rs6049324	0.82[EUR][1000 genomes]
rs6049325	0.82[EUR][1000 genomes]
rs6049327	0.82[EUR][1000 genomes]
rs6049328	0.82[EUR][1000 genomes]
rs67943254	0.82[EUR][1000 genomes]
rs68050039	0.82[EUR][1000 genomes]
rs7261741	0.84[EUR][1000 genomes]
rs8124201	0.80[EUR][1000 genomes]
rs8125708	0.82[EUR][1000 genomes]
rs9967908	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv15775	chr20:23955662-23977093	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv820636	chr20:23956042-23976910	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv18738	chr20:23956042-23994680	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1806279	chr20:23956609-23980100	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv962565	chr20:23956974-23976574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv962598	chr20:23971365-23976074	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	esv16644	chr20:23971832-23976616	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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