Variant report

Variant	rs3866469
Chromosome Location	chr8:19658534-19658535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19656532..19659284-chr8:19668673..19672507,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10090638	0.88[CEU][hapmap]
rs11204075	0.83[JPT][hapmap]
rs11204077	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985584	0.86[CHB][hapmap]
rs13280085	0.85[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1472165	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.99[ASN][1000 genomes]
rs1492638	0.96[ASN][1000 genomes]
rs1972009	0.91[ASN][1000 genomes]
rs2083640	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2083641	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3855754	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4084615	0.83[JPT][hapmap]
rs4398935	0.91[AFR][1000 genomes]
rs4921677	0.96[ASN][1000 genomes]
rs4922100	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58556504	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6586867	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982084	0.88[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6986456	0.88[CEU][hapmap]
rs6995371	0.91[AFR][1000 genomes]
rs6995945	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6996994	0.82[JPT][hapmap]
rs7006468	0.83[JPT][hapmap]
rs7009967	0.83[JPT][hapmap]
rs7012243	0.90[ASN][1000 genomes]
rs7012694	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7821530	0.83[JPT][hapmap]
rs7821642	0.83[JPT][hapmap]
rs7823457	0.82[AFR][1000 genomes]
rs920590	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv890629	chr8:19625038-19665351	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv890630	chr8:19635098-19658912	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3866469	INTS10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19658400-19659200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:19658400-19659800	Enhancers	HepG2	liver

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