The 2.0 version of rSNPBase

Variant report

Variant rs386696529
Chromosome Location chr6:5783184-5783185
allele CG/GT
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5753000-5786000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr6:5766000-5783400 Weak transcription Brain Hippocampus Middle brain
3 chr6:5766000-5783400 Weak transcription Right Atrium heart
4 chr6:5772200-5783200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr6:5772800-5786800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr6:5774400-5787400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr6:5776400-5786800 Weak transcription Thymus Thymus
8 chr6:5779200-5787200 Weak transcription Primary B cells from cord blood blood
9 chr6:5779600-5786600 Weak transcription Primary T cells from cord blood blood
10 chr6:5781200-5784400 Enhancers Fetal Muscle Leg muscle
11 chr6:5781400-5783400 Enhancers Primary neutrophils fromperipheralblood blood
12 chr6:5781400-5784200 Enhancers Fetal Muscle Trunk muscle
13 chr6:5781600-5783400 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
14 chr6:5781600-5788000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr6:5781800-5783400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
16 chr6:5781800-5783800 Enhancers Left Ventricle heart
17 chr6:5781800-5786800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
18 chr6:5782000-5783400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
19 chr6:5782000-5784400 Enhancers Fetal Intestine Large intestine
20 chr6:5782200-5783200 Enhancers Spleen Spleen
21 chr6:5782200-5784200 Enhancers Fetal Heart heart
22 chr6:5782200-5788200 Enhancers Fetal Thymus thymus
23 chr6:5782400-5783600 Enhancers ES-WA7 Cell Line embryonic stem cell
24 chr6:5782400-5783800 Enhancers H1 Cell Line embryonic stem cell
25 chr6:5782400-5783800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr6:5782400-5784000 Enhancers Stomach Mucosa stomach
27 chr6:5782400-5784200 Enhancers Right Ventricle heart
28 chr6:5782400-5785000 Enhancers HUES6 Cell Line embryonic stem cell
29 chr6:5782600-5783200 Enhancers Primary monocytes fromperipheralblood blood
30 chr6:5782600-5783200 Enhancers Primary B cells from peripheral blood blood
31 chr6:5782600-5783400 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr6:5782600-5783400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr6:5782600-5783600 Enhancers Breast Myoepithelial Primary Cells Breast
34 chr6:5782600-5783800 Enhancers iPS-18 Cell Line embryonic stem cell
35 chr6:5782600-5784000 Enhancers Fetal Brain Female brain
36 chr6:5782600-5784200 Enhancers Colonic Mucosa Colon
37 chr6:5782600-5784200 Enhancers Fetal Brain Male brain
38 chr6:5782600-5784200 Enhancers Fetal Intestine Small intestine
39 chr6:5782600-5787600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr6:5782800-5783200 Active TSS Duodenum Mucosa Duodenum
41 chr6:5782800-5783200 Enhancers Rectal Mucosa Donor 29 rectum
42 chr6:5782800-5783400 Enhancers Gastric stomach
43 chr6:5782800-5783800 Enhancers iPS-20b Cell Line embryonic stem cell
44 chr6:5782800-5783800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
45 chr6:5782800-5783800 Enhancers Brain Germinal Matrix brain
46 chr6:5782800-5783800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
47 chr6:5782800-5783800 Enhancers HSMMtube muscle
48 chr6:5782800-5784200 Enhancers Cortex derived primary cultured neurospheres brain
49 chr6:5782800-5784200 Weak transcription Small Intestine intestine
50 chr6:5782800-5784400 Enhancers Placenta Placenta

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Last update: Aug 31, 2015