Variant report

Variant	rs3870336
Chromosome Location	chr3:49557857-49557858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49551705..49554065-chr3:49554259..49559105,5	K562	blood:
2	chr3:49507807..49509484-chr3:49555798..49559257,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1060970	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.94[MKK][hapmap];0.88[YRI][hapmap]
rs13078949	0.93[YRI][hapmap]
rs1464567	0.91[LWK][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3870336	IHPK2	Cis_1M	lymphoblastoid	RTeQTL
rs3870336	IP6K2	cis	brain	BrainEAC

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49529600-49568600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:49539600-49568600	Weak transcription	Small Intestine	intestine
3	chr3:49546200-49577000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:49547000-49572000	Weak transcription	Fetal Brain Male	brain
5	chr3:49547400-49562200	Strong transcription	Primary T cells from cord blood	blood
6	chr3:49547600-49564200	Strong transcription	Fetal Intestine Small	intestine
7	chr3:49547800-49558000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:49547800-49559000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:49547800-49560400	Strong transcription	Fetal Thymus	thymus
10	chr3:49547800-49562800	Strong transcription	Fetal Stomach	stomach
11	chr3:49548000-49562800	Strong transcription	Fetal Intestine Large	intestine
12	chr3:49548400-49577400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:49549200-49568800	Weak transcription	Osteobl	bone
14	chr3:49550200-49558000	Strong transcription	Duodenum Mucosa	Duodenum
15	chr3:49550600-49558600	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:49550800-49568400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:49551200-49561600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:49551400-49571400	Weak transcription	Stomach Mucosa	stomach
19	chr3:49551400-49572200	Weak transcription	NH-A	brain
20	chr3:49551600-49567600	Weak transcription	K562	blood
21	chr3:49551600-49569400	Weak transcription	Fetal Kidney	kidney
22	chr3:49552200-49558200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:49553000-49558000	Strong transcription	Primary B cells from cord blood	blood
24	chr3:49553000-49558200	Genic enhancers	Left Ventricle	heart
25	chr3:49553200-49559400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:49553600-49558200	Enhancers	Right Atrium	heart
27	chr3:49553800-49568400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:49554000-49567000	Weak transcription	A549	lung
29	chr3:49554000-49567600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr3:49554200-49558000	Strong transcription	Aorta	Aorta
31	chr3:49554400-49568200	Weak transcription	NHDF-Ad	bronchial
32	chr3:49554800-49558000	Genic enhancers	Placenta	Placenta
33	chr3:49554800-49558000	Enhancers	Psoas Muscle	Psoas
34	chr3:49554800-49558200	Genic enhancers	Pancreas	Pancrea
35	chr3:49554800-49558400	Strong transcription	Esophagus	oesophagus
36	chr3:49554800-49558400	Genic enhancers	Fetal Muscle Leg	muscle
37	chr3:49554800-49559400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:49555000-49558200	Genic enhancers	Right Ventricle	heart
39	chr3:49555200-49561000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:49555400-49558400	Enhancers	Liver	Liver
41	chr3:49555400-49560200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr3:49555400-49564000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr3:49555400-49567600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:49555400-49567600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:49555400-49567800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:49555400-49568000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:49555400-49568200	Weak transcription	NHLF	lung
48	chr3:49555400-49568600	Weak transcription	Fetal Lung	lung
49	chr3:49555600-49567800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:49555800-49558200	Enhancers	Cortex derived primary cultured neurospheres	brain

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