Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63128770..63130452-chr17:63143108..63145459,2	MCF-7	breast:
2	chr17:63133396..63138666-chr17:63139121..63145017,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108370	Chromatin interaction

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1010271	0.80[MEX][hapmap]
rs2007246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2585862	0.86[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869574	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs299823	0.93[CEU][hapmap];0.92[CHB][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34695575	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs392449	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427842	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359499	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1009898	chr17:63135734-63146723	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63135800-63146800	Weak transcription	Thymus	Thymus
3	chr17:63138600-63151200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:63142800-63143600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:63142800-63143800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr17:63142800-63144800	Enhancers	Brain Hippocampus Middle	brain
8	chr17:63143000-63143400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr17:63143000-63143600	Enhancers	Liver	Liver
10	chr17:63143000-63143600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr17:63143000-63143600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:63143000-63143600	Enhancers	Brain Substantia Nigra	brain
13	chr17:63143000-63143600	Enhancers	Lung	lung
14	chr17:63143000-63143600	Enhancers	Ovary	ovary
15	chr17:63143000-63143600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr17:63143000-63143600	Enhancers	Spleen	Spleen
17	chr17:63143000-63143800	Enhancers	Brain Anterior Caudate	brain
18	chr17:63143000-63147000	Enhancers	GM12878-XiMat	blood
19	chr17:63143200-63143400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr17:63143200-63143400	Active TSS	Esophagus	oesophagus
21	chr17:63143200-63143600	Enhancers	Brain Angular Gyrus	brain
22	chr17:63143200-63143600	Enhancers	Fetal Muscle Trunk	muscle
23	chr17:63143200-63143600	Enhancers	Fetal Thymus	thymus

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