Variant report

Variant	rs38738
Chromosome Location	chr7:140710641-140710642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140395386..140400852-chr7:140710628..140716984,11	MCF-7	breast:
2	chr7:140701629..140704089-chr7:140709964..140711981,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000090266	Chromatin interaction
ENSG00000240889	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs801125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140698600-140713000	Weak transcription	Psoas Muscle	Psoas
2	chr7:140699600-140713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:140701400-140713400	Weak transcription	NHLF	lung
4	chr7:140702800-140713200	Weak transcription	HSMMtube	muscle
5	chr7:140703200-140713800	Weak transcription	Stomach Mucosa	stomach
6	chr7:140703400-140713800	Weak transcription	Gastric	stomach
7	chr7:140703600-140710800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:140703600-140713800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:140703600-140713800	Weak transcription	Lung	lung
10	chr7:140704000-140713800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:140704400-140711400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:140704800-140711000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:140705000-140710800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr7:140705000-140711000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:140705000-140712200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:140705000-140713600	Weak transcription	NH-A	brain
17	chr7:140705200-140710800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr7:140705200-140710800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr7:140705200-140710800	Strong transcription	Liver	Liver
20	chr7:140705200-140710800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:140705200-140710800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr7:140705200-140711400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr7:140705200-140713200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:140705200-140713200	Weak transcription	Brain Germinal Matrix	brain
25	chr7:140705200-140713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:140705400-140710800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:140705400-140710800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:140705400-140710800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:140705400-140711000	Strong transcription	NHEK	skin
30	chr7:140705400-140713000	Weak transcription	Dnd41	blood
31	chr7:140705400-140713600	Weak transcription	HUVEC	blood vessel
32	chr7:140705600-140710800	Strong transcription	Left Ventricle	heart
33	chr7:140705600-140711000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:140705800-140710800	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr7:140705800-140711000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:140705800-140711000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:140706800-140712400	Weak transcription	NHDF-Ad	bronchial
38	chr7:140706800-140713600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:140707200-140711600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr7:140707200-140713200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:140707200-140713800	Weak transcription	Small Intestine	intestine
42	chr7:140707400-140713600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:140707400-140713600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr7:140707600-140713400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:140707600-140713600	Weak transcription	Fetal Brain Male	brain
46	chr7:140707600-140713800	Weak transcription	Aorta	Aorta
47	chr7:140707600-140713800	Weak transcription	Spleen	Spleen
48	chr7:140707800-140712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:140707800-140713000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:140707800-140713200	Weak transcription	Thymus	Thymus

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